View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18213_low_20 (Length: 248)

Name: NF18213_low_20
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18213_low_20
NF18213_low_20
[»] chr6 (6 HSPs)
chr6 (1-197)||(6395241-6395437)
chr6 (24-184)||(6399658-6399818)
chr6 (51-196)||(14821138-14821283)
chr6 (25-193)||(6426912-6427083)
chr6 (51-110)||(8913661-8913720)
chr6 (51-102)||(6596546-6596597)
[»] chr1 (6 HSPs)
chr1 (51-168)||(29691002-29691119)
chr1 (51-168)||(29718514-29718631)
chr1 (51-168)||(29658487-29658604)
chr1 (41-110)||(33160945-33161014)
chr1 (51-110)||(52093225-52093284)
chr1 (51-161)||(30827546-30827656)
[»] chr7 (1 HSPs)
chr7 (24-142)||(15091714-15091832)
[»] chr3 (2 HSPs)
chr3 (54-110)||(514317-514373)
chr3 (42-102)||(51764046-51764106)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 6395241 - 6395437
Alignment:
Q  1 cagtttctaacgagtgnnnnnnnggttgtttctgtgagataacaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacat 100  Q
    ||||||||||||||||       |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6395241 cagtttctaacgagtgaaaaaaaggttgtttctgtgagataaccaccacaaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacat 6395340  T
Q  101 gttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagttagtctg 197  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6395341 gttgatcatttagactagtaatgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagttagtctg 6395437  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 6399658 - 6399818
Alignment:
Q  24 ggttgtttctgtgagataacaac---cataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagta 120  Q
    |||||||||||||||||||||||   ||  |||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||   ||  |    
T  6399658 ggttgtttctgtgagataacaacaagcaccaaggtttacagacaccaaattactaagaaacacagagaaatcaacaacatgttgatcattta---aatca 6399754  T
Q  121 atgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaa 184  Q
     ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  6399755 gtgttacaaagttccaaatattgtatacatggagacttggataacagacggtgaattgtattaa 6399818  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 14821138 - 14821283
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 150  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||| ||  | ||     ||||||||||||||||||||||    
T  14821138 aaggtttatagataccaaattaccaagacacaaacaaaaatcaacaacatgttgattatttagaaaataagtgctttgaagttccaaatgttgtatacat 14821237  T
Q  151 ggagacttggatagcagacggtgaattgtattaacgaagttagtct 196  Q
    ||||||||||||| |||||| ||||||||| |||| ||||||||||    
T  14821238 ggagacttggataacagacgttgaattgtactaacaaagttagtct 14821283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 6426912 - 6427083
Alignment:
Q  25 gttgtttctgtgagataa---caaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaa 121  Q
    |||||||||||||||| |   ||||||  |||||||||||| ||||| ||||||| ||||||| | |  ||| ||||| |||||||  ||||| ||| |     
T  6426912 gttgtttctgtgagatgatgacaaccactaaggtttatagacaccaacttaccaaaaaacaaacacatctcatcaacaagttgatcggttagaaaagaag 6427011  T
Q  122 tgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagttag 193  Q
    |   || ||||||||||||||||||||||||| ||||||||| || || |||||||| ||||| ||||||||    
T  6427012 tactacgaagttccaaatgttgtatacatggacacttggataacatacagtgaattgaattaatgaagttag 6427083  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 8913720 - 8913661
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 110  Q
    |||||||||||| ||||||||||||||||||||||| || |  |||||||||||||||||    
T  8913720 aaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcatt 8913661  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 6596597 - 6596546
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgt 102  Q
    |||||||||||| ||||||| ||||||||||||||||||  || ||||||||    
T  6596597 aaggtttatagaaaccaaatcaccaagaaacaaagagaacccagcaacatgt 6596546  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 29691119 - 29691002
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 150  Q
    |||||||||||| ||||||| | |||||||||||||||| ||  |||||||||||||||| ||| || || |||||| ||| ||||||||||||||| ||    
T  29691119 aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatat 29691020  T
Q  151 ggagacttggatagcaga 168  Q
    ||||| ||||||| ||||    
T  29691019 ggagagttggataacaga 29691002  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 29718631 - 29718514
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 150  Q
    |||||||||||| ||||||| | |||||||||||||||| ||  |||||||||||||||| ||| || || |||||| ||| ||||||||||||||| ||    
T  29718631 aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatat 29718532  T
Q  151 ggagacttggatagcaga 168  Q
    ||||| ||||||| ||||    
T  29718531 ggagagttggataacaga 29718514  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 29658604 - 29658487
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 150  Q
    |||||||||||| ||||||| | |||||||||||||||| ||  |||||||||||||||| ||| |  || || ||| ||| ||||||||||||||| |     
T  29658604 aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaacttagtgcgactaagatccaaatgttgtatatac 29658505  T
Q  151 ggagacttggatagcaga 168  Q
    ||||| ||||||| ||||    
T  29658504 ggagagttggataacaga 29658487  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 33160945 - 33161014
Alignment:
Q  41 aacaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 110  Q
    |||| |||| |||||||||||| ||||||  | |||||||||||||||| ||  ||||||||||||||||    
T  33160945 aacatccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcatt 33161014  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 52093225 - 52093284
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 110  Q
    |||||||||||| |||||||||||||||| |||||| ||  |||||| || |||||||||    
T  52093225 aaggtttatagacaccaaattaccaagaaccaaagacaacccaacaatatcttgatcatt 52093284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 30827546 - 30827656
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 150  Q
    |||||||||||| || |||| |  ||||| ||||||||| ||  |||||||||||||||| ||| ||  | ||  || ||| ||||||||||||||| ||    
T  30827546 aaggtttatagacactaaatgaggaagaagcaaagagaagtcggcaacatgttgatcattgagaaaacaagtgaaactaagatccaaatgttgtatatat 30827645  T
Q  151 ggagacttgga 161  Q
    ||||| |||||    
T  30827646 ggagagttgga 30827656  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 15091832 - 15091714
Alignment:
Q  24 ggttgtttctgtgagataacaac---cataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagta 120  Q
    ||||||||||||||||| || ||   ||| |||||||||||| |||||||||| |||||| | |||||||||||||||||||||||||||   | || ||    
T  15091832 ggttgtttctgtgagattacgacaagcattaaggtttatagacaccaaattactaagaaatagagagaaatcaacaacatgttgatcatt---aaaacta 15091736  T
Q  121 atgtgacaaagttccaaatgtt 142  Q
     ||| |||||||||||||||||    
T  15091735 gtgttacaaagttccaaatgtt 15091714  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 514373 - 514317
Alignment:
Q  54 gtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 110  Q
    ||||||||| | ||||| |||||||||||| || ||||| |||||||||||||||||    
T  514373 gtttatagacaacaaatgaccaagaaacaatgacaaatccacaacatgttgatcatt 514317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 51764106 - 51764046
Alignment:
Q  42 acaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgt 102  Q
    |||||||  ||||||||| || |||||||||| |||||||||||| ||||  |||||||||    
T  51764106 acaaccactaaggtttatggacaccaaattactaagaaacaaagacaaatttacaacatgt 51764046  T

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