View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18213_low_23 (Length: 237)
Name: NF18213_low_23
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18213_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31559464 - 31559242
Alignment:
| Q |
1 |
ttttcctagttggaaatgatgggggaccatatgagaaatcaggtcagagtttcgcttgtagaagctcttaactgttggaataacaacatatatcagtgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31559464 |
ttttcctagttggaaatgatgggggaccatatgagaaatcaggtcagagtttcgcttgtagaagctcttaactgttggaataacaacatatatcagtgaa |
31559365 |
T |
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| Q |
101 |
ctgatcaaattaaacttgagaccaattacatcctctaagccaaggtggatgaatccacaaattcttctccatgcaaggatcatagttaagtctagataat |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
31559364 |
ctgatcaaattaaccttgagaccaattacatcctctaagccaaggtggatgaatccacaaattcttctccatgcaaggatcatagcaaagtctagagaat |
31559265 |
T |
|
| Q |
201 |
atgtgattgtccaagttgtatgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
31559264 |
atgtgattgtccaagttgtatgt |
31559242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 31877355 - 31877562
Alignment:
| Q |
13 |
gaaatgatgggggaccatatgagaaatcaggtcagagtttcgcttgtagaagctcttaactgttggaataacaacatatatcagtgaactgatcaaatta |
112 |
Q |
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|||||||||||| | ||||||| |||| ||| ||||||| | | ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
31877355 |
gaaatgatggggaagcatatgaaaaatatggtgagagtttttcatacagaagctcttaactgttggaataacaacatatatccgtgaattgatcaaattc |
31877454 |
T |
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| Q |
113 |
aacttgagaccaattacatcctctaagccaaggtggatgaatccacaaattcttctccatgcaaggatcatagttaagtctagataatatgtgattgtcc |
212 |
Q |
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| T |
31877455 |
accttgagactgattacatcctccaagccaaggtggatgaatccacaaattcttgtcaatgcaaggatcatagtaaagtctagagaatatgtgattgtcc |
31877554 |
T |
|
| Q |
213 |
aagttgta |
220 |
Q |
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|||||||| |
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| T |
31877555 |
aagttgta |
31877562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31556458 - 31556232
Alignment:
| Q |
1 |
ttttcctagttggaaatgatgggggaccatatgagaaatcaggtcagagtttcgcttgtagaagctcttaactgttggaataacaacatatatcagtgaa |
100 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||| | | || ||| || || |||| ||| ||||||||||| | |
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| T |
31556458 |
ttttcctagtttaaaatgatggaggaccatatgagaaatcaggtcagagtttctcatata-aagaa--tatgtggatgaattacatcatatatcagtcag |
31556362 |
T |
|
| Q |
101 |
c----tgatcaaattaaacttgagaccaattacatcctctaagccaaggtggatga---atccacaaattcttctccatgcaaggatcatagttaagtct |
193 |
Q |
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| |||||||||||| |||||||||||||||||||| ||||||| |||||||| |||||||||||||| || |||||||||||||||| ||||| |
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| T |
31556361 |
cgacttgatcaaattaacattgagaccaattacatcctccaagccaaagtggatgatgaatccacaaattcttgtcaatgcaaggatcatagtaaagtca |
31556262 |
T |
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| Q |
194 |
agataatatgtgattgtccaagttgtatgt |
223 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
31556261 |
agagaatatgtgattgtccaagttgtatgt |
31556232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 31561342 - 31561190
Alignment:
| Q |
13 |
gaaatgatgggggaccatatgagaaatcaggtcagagtttcgcttgtagaagctcttaactgttggaataacaacatatatcagtga----actgatcaa |
108 |
Q |
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|||||||||||| | ||||||| |||| ||| ||||||| | | |||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
31561342 |
gaaatgatggggaagcatatgaaaaatatggtgagagtttttcatacagaagctcttaactgttggaataacaacatatatcagtgagtgaattgatcaa |
31561243 |
T |
|
| Q |
109 |
attaaacttgagaccaattacatcctctaagccaaggtggatgaatccacaaa |
161 |
Q |
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||| | ||||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
31561242 |
attcaccttgagaccgattacatcctccaagccaaggtggatgaatccgcaaa |
31561190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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