View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18213_low_27 (Length: 224)
Name: NF18213_low_27
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18213_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 8319542 - 8319734
Alignment:
| Q |
19 |
ccattgtcaatttcattctttaatttcattatggtccatgattaattaataaactgagtcatgctgttatacacattatcgaccattattaattcacatt |
118 |
Q |
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| T |
8319542 |
ccattgtcaatttcattctttaatttcattatggtccatgattaattaataaactgagtcatgctgttatacacattatcgaccattattaattcacatt |
8319641 |
T |
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| Q |
119 |
atcaaccattctacactgtaaaaatctactgctaatgcttcctcccttcaatcaccttttattgtttagatgagaaatattttcacacctttg |
211 |
Q |
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| T |
8319642 |
atcaaccattctacactgtaaaaatctactgctaatgcttcctcccttcaatcaccttttattgtttagatgagaaatgttttcccacctttg |
8319734 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 8329485 - 8329555
Alignment:
| Q |
141 |
aatctactgctaatgcttcctcccttcaatcaccttttattgtttagatgagaaatattttcacacctttg |
211 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
8329485 |
aatctactgctaatgctccctccattcaatcaccttttattgtttagatgagaaatgttttcccacctttg |
8329555 |
T |
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