View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18213_low_5 (Length: 511)

Name: NF18213_low_5
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18213_low_5
NF18213_low_5
[»] chr4 (10 HSPs)
chr4 (7-495)||(6387580-6388068)
chr4 (45-164)||(6392501-6392620)
chr4 (47-164)||(10553828-10553954)
chr4 (97-182)||(10481828-10481913)
chr4 (29-81)||(831996-832048)
chr4 (45-76)||(8437405-8437436)
chr4 (117-164)||(8443800-8443847)
chr4 (357-403)||(10460054-10460100)
chr4 (87-164)||(10571607-10571684)
chr4 (291-327)||(8448173-8448209)
[»] chr8 (1 HSPs)
chr8 (45-94)||(21258682-21258731)
[»] chr3 (1 HSPs)
chr3 (97-164)||(25915638-25915705)
[»] chr2 (1 HSPs)
chr2 (113-141)||(25376801-25376829)


Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 7 - 495
Target Start/End: Complemental strand, 6388068 - 6387580
Alignment:
Q  7 tccaagaaaatatatccgaaacagagtgatcacgtagagccaaccagttaatagtaccattcaaatacaccccatggttattaaacctgcaaagtggaag 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6388068 tccaataaaatatatccgaaacagagtgatcacgtagagccaaccagttaatagtatcattcaaatacaccccatggttattaaacctgcaaagtggaag 6387969  T
Q  107 catggggaagcattgaatatttctccaagaattattccccatgctgaaaattttcacccagattcttggattaccatgctccacgtccaactctttgcag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6387968 catggggaagcattgaatatttctccaagaattattccccatgctgaaaattttcacccagattcttggattaccatgctccacgtccaactctttgcag 6387869  T
Q  207 aatgacaccaccttataagttttggccaaagtatcgtaaccaaaagcaaaccaaatacaattgttagaagagggtaacaaatactcagattttgtcctag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6387868 aatgacaccaccttataagttttggccaaagtatcgtaaccaaaagcaaaccaaatacaattgttagaagagggtaacaaatactcagattttgtcctag 6387769  T
Q  307 tggcggggttccaaaaacagattcgtgaatcttgagaacgtgacttacgcatatcaatcaagcatagcaatccattacaccaaccaacgacccaccaacg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6387768 tggcggggttccaaaaacagattcgtgaatcttgagaacgtgacttacgcatatcaatcaagcatagcaatccattacaccaaccaacgacccaccaacg 6387669  T
Q  407 gcagtagtcattggtcaatctatagtaaggatcataataaagaacggaagtcgagtgattctcgagtaaacgagaaattgggaaggtta 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6387668 gcagtagtcattggtcaatctatagtaaggatcataataaagaacggaggtcgagtgattctcgagtaaacgagaaattgggaaggtta 6387580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 6392620 - 6392501
Alignment:
Q  45 gccaaccagttaatagtaccattcaaatacaccccatggttat-taaacctgcaaagtggaagcatggggaagcattgaatatttctccaagaattattc 143  Q
    |||||||| |||||||||||| ||| |||||| |||| ||||| ||||| |||||  |||| | |  |||||||||||||||||||||||||||||||      
T  6392620 gccaaccaattaatagtaccagtcacatacacaccattgttatctaaacttgcaat-tggaggaacagggaagcattgaatatttctccaagaattatca 6392522  T
Q  144 cccatgctgaaaattttcacc 164  Q
    ||||| |||||||| ||||||    
T  6392521 cccatactgaaaatattcacc 6392501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 10553828 - 10553954
Alignment:
Q  47 caaccagttaatagtaccattcaaatacaccccatggttatt---------aaacctgcaaagtggaagcatggggaagcattgaatatttctccaagaa 137  Q
    |||||||||||| ||||||||||||||||| |||| ||| ||         ||||| | |||||||||||| |||||| |||||||| |||||||| |||    
T  10553828 caaccagttaattgtaccattcaaatacacaccattgttcttttcacgcttaaaccagtaaagtggaagcacggggaaacattgaatgtttctccatgaa 10553927  T
Q  138 ttattccccatgctgaaaattttcacc 164  Q
    |||| | ||||| |||| | |||||||    
T  10553928 ttatccgccatgttgaatactttcacc 10553954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 10481913 - 10481828
Alignment:
Q  97 aaagtggaagcatggggaagcattgaatatttctccaagaattattccccatgctgaaaattttcacccagattcttggattacca 182  Q
    ||||||||||||  || || |||||||||||||||||| |||||| || ||| ||||||| |||||||  | |||||| |||||||    
T  10481913 aaagtggaagcacaggaaaacattgaatatttctccaacaattatccctcatactgaaaactttcaccacgcttcttgcattacca 10481828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 832048 - 831996
Alignment:
Q  29 agagtgatcacgtagagccaaccagttaatagtaccattcaaatacaccccat 81  Q
    ||||| |||||| |||||||||||||||||| |||||||||||| ||| ||||    
T  832048 agagtaatcacgaagagccaaccagttaataataccattcaaatgcacaccat 831996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 76
Target Start/End: Original strand, 8437405 - 8437436
Alignment:
Q  45 gccaaccagttaatagtaccattcaaatacac 76  Q
    ||||||||||||||||||||||||||||||||    
T  8437405 gccaaccagttaatagtaccattcaaatacac 8437436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 8443800 - 8443847
Alignment:
Q  117 cattgaatatttctccaagaattattccccatgctgaaaattttcacc 164  Q
    ||||||||||||||||||||| ||||||| ||||| |||| |||||||    
T  8443800 cattgaatatttctccaagaactattcccaatgcttaaaactttcacc 8443847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 10460100 - 10460054
Alignment:
Q  357 atatcaatcaagcatagcaatccattacaccaaccaacgacccacca 403  Q
    |||||||||||||||||||||||||| ||  ||||||| ||||||||    
T  10460100 atatcaatcaagcatagcaatccattgcatgaaccaacaacccacca 10460054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 10571607 - 10571684
Alignment:
Q  87 ttaaacctgcaaagtggaagcatggggaagcattgaatatttctccaagaattattccccatgctgaaaattttcacc 164  Q
    ||||||| | |||||||||||| |||||| |||||||| |||||||  ||||||| | ||||| |||| | |||||||    
T  10571607 ttaaaccagtaaagtggaagcacggggaaacattgaatgtttctccttgaattatccgccatgttgaatactttcacc 10571684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 8448173 - 8448209
Alignment:
Q  291 tcagattttgtcctagtggcggggttccaaaaacaga 327  Q
    |||||||||||||||||||| |||||||| |||||||    
T  8448173 tcagattttgtcctagtggctgggttccataaacaga 8448209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 21258731 - 21258682
Alignment:
Q  45 gccaaccagttaatagtaccattcaaatacaccccatggttattaaacct 94  Q
    |||||||| |||||||||||| |||||||||| |||| ||||||||||||    
T  21258731 gccaaccaattaatagtaccactcaaatacacaccattgttattaaacct 21258682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 25915638 - 25915705
Alignment:
Q  97 aaagtggaagcatggggaagcattgaatatttctccaagaattattccccatgctgaaaattttcacc 164  Q
    |||| |||||||  |||||||||||||| |||||||| |||| || ||||||||||| || |||||||    
T  25915638 aaaggggaagcacagggaagcattgaatgtttctccatgaatcatcccccatgctgagaactttcacc 25915705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 25376829 - 25376801
Alignment:
Q  113 gaagcattgaatatttctccaagaattat 141  Q
    |||||||||||||||||||||||||||||    
T  25376829 gaagcattgaatatttctccaagaattat 25376801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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