View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18213_low_9 (Length: 449)
Name: NF18213_low_9
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18213_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 12945057 - 12944838
Alignment:
| Q |
20 |
ggagctggcgaagatttttgcagcacgcggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatctttgatcgttctaaggca |
119 |
Q |
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| T |
12945057 |
ggagctggcgaagattttggcggcacgtggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatctttgatcgttctaaggca |
12944958 |
T |
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| Q |
120 |
caagttttgcttgaaaatgttaagaaatttatactctctgctgtttctgttgctcctcaatcctctatgtgacacttt---gtagcatgtgtttttcttt |
216 |
Q |
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| T |
12944957 |
caagttttgcttgaaaatgttaagaaatttatactctctgctgtttctgttgctcctcaatcctctatgtgacactttgtggtagcatgtgtttttcttt |
12944858 |
T |
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| Q |
217 |
ttcccttataaacaatgttt |
236 |
Q |
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|||||||||||||||||||| |
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| T |
12944857 |
ttcccttataaacaatgttt |
12944838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 234 - 434
Target Start/End: Complemental strand, 12944807 - 12944606
Alignment:
| Q |
234 |
tttaataaataataaaattacggcattacattgttgtttaacagaagaaaaatgactcgatatgattcaattatatatgcagcattcacaaataatggga |
333 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12944807 |
tttaataaataataaaattatggcattacattgttgtttagtagaagaaaaattactcgatatgattcaattatatatgcagcattcacaaataatggga |
12944708 |
T |
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| Q |
334 |
ttgggttaggcatctgtttacacaatgaacatagtatttcctttgattagagtaacaagattaaatctctacgtaag-ttagatcagttagtcggaatat |
432 |
Q |
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| T |
12944707 |
ttgggttaggcatctgtttacacaatgaacatagtattttctttgattagagtaacaagattaaatctccacgtaagtttagatcagttggtcggaatat |
12944608 |
T |
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| Q |
433 |
tg |
434 |
Q |
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|| |
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| T |
12944607 |
tg |
12944606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 12937385 - 12937254
Alignment:
| Q |
20 |
ggagctggcgaagatttttgcagcacgcggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatctttgatcgttctaaggca |
119 |
Q |
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|||||| | ||||||||| | ||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||| | |||||||| |
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| T |
12937385 |
ggagctagtgaagattttggaggcacgtggggtgcacgtggagtctgttttttgtgaggatgggtttcatgctgtggaactctttgatcctgctaaggca |
12937286 |
T |
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| Q |
120 |
caagttttgcttgaaaatgttaagaaatttat |
151 |
Q |
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|||| || ||||| | |||||||||||||| |
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| T |
12937285 |
caagcattacttgattacgttaagaaatttat |
12937254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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