View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18214_high_1 (Length: 770)
Name: NF18214_high_1
Description: NF18214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18214_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 18 - 760
Target Start/End: Complemental strand, 25248194 - 25247471
Alignment:
| Q |
18 |
atacctccaaactacctattaccatatatcatataatcttatcatatctagcctcttaannnnnnnnnnnnnnnnnnagaatatctagccccttaataaa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
25248194 |
atacctccaaactacctattaccatatatcatataatcttatcatatctagcctcttaatatttttatttttttt--agaatatctagccctttaataaa |
25248097 |
T |
|
| Q |
118 |
aacacacaaacttacaaataaattaatcaacatgccaaacgcacacacaaaaagcctcaaccacacgaaacctcctcataattccatcctctcacaaaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
25248096 |
aacacacaaacttacaaataaattaatcaacatgccaaacgcacacacaaaaagcctcaaccacacgaaacctccccataatttcatcctctcacaaaaa |
25247997 |
T |
|
| Q |
218 |
ccattctatatttccctcacttctactcttcttccactctcaccaaattaatatattaattattcttcatcactctttcatctatcacactctttacact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25247996 |
ccattctatatttccctcacttctactcttcttccactctcaccaaattaatatcttaattattcttcatcactctttcatctatcacactctttacac- |
25247898 |
T |
|
| Q |
318 |
ctcaaactctttacactctcaacatcatcatgtcggtgaaggagtgtgatcaccacaaaggaagaaaaagaatactcttccaaagaatattttgggcaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25247897 |
----------------tctcaacatcatcatgtcggtgaaggagtgtgatcaccacaaaggaagaaaaagaatactcttccaaagaatattttgggccat |
25247814 |
T |
|
| Q |
418 |
catggtattcctcttcatagtcctactaacaattctcctcatatgggcaatcctaagaccaacaaaacctactttcatcctcttagatgtaaccctatat |
517 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25247813 |
catggtattcctcttcttagtcctactaacaattctcctcatatgggcaatcctaagaccaacaaaacctactttcatcctcttagatgtaaccctatat |
25247714 |
T |
|
| Q |
518 |
gctttcaacgcatcacaaccaaatttcttaacctccaacttccaagtaacactttcgtctcgaaatcccaacgataacatcggtgtatactacgatcgtc |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25247713 |
gctttcaacgcatcacaaccaaatttcttaacctcaaactttcaagtaacactttcgtctcgaaatcccaacgataacatcggtgtatactacgatcgtc |
25247614 |
T |
|
| Q |
618 |
tcgatacttacatgacctaccggagccaacagattacttaccggaccgccataccgccttcttaccaaggacacaatgagtatgacgtttggtctccgtt |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25247613 |
tcgatacttacatgacctaccggagccaacagattactctccggaccgccataccgccttcttaccaaggtcacaatgagtatgacgtttggtctccgtt |
25247514 |
T |
|
| Q |
718 |
tgtttacggcaatgatatacctgttgctccttttaactctgtg |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25247513 |
tgtttacggcaatgatatacctgttgctccttttaactctgtg |
25247471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 425 - 726
Target Start/End: Complemental strand, 43077022 - 43076721
Alignment:
| Q |
425 |
ttcctcttcatagtcctactaacaattctcctcatatgggcaatcctaagaccaacaaaacctactttcatcctcttagatgtaaccctatatgctttca |
524 |
Q |
| |
|
||||||||||| |||||| ||||||| || |||| ||||| || ||| ||| | |||||| ||||||| ||| |||||| || | || ||||||| |
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| T |
43077022 |
ttcctcttcattgtcctagtaacaatcctaatcatttgggctgtcttaaaaccttctaaaccttctttcattctccaagatgtcactgtttacgctttca |
43076923 |
T |
|
| Q |
525 |
acgcatcacaaccaaatttcttaacctccaacttccaagtaacactttcgtctcgaaatcccaacgataacatcggtgtatactacgatcgtctcgatac |
624 |
Q |
| |
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|||| || ||||||||||||||||| || |||||||| ||| |||| || || |||||||||||||| || ||| | |||||||||||||| ||| | |
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| T |
43076922 |
acgccacagttccaaatttcttaacctcaaatttccaagtcacagtttcttcacgtaatcccaacgataaaattggtatctactacgatcgtcttgattc |
43076823 |
T |
|
| Q |
625 |
ttacatgacctaccggagccaacagattacttaccggaccgccataccgccttcttaccaaggacacaatgagtatgacgtttggtctccgtttgtttac |
724 |
Q |
| |
|
|||| | || |||||||||||||| ||||||||| | ||||||||||| || || || || |||||||| ||| ||| ||||||||||||||||||||| |
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|
| T |
43076822 |
ttacgtcacataccggagccaacaaattacttacagaaccgccatacctccgtcgtatcagggacacaaagaggttgatgtttggtctccgtttgtttac |
43076723 |
T |
|
| Q |
725 |
gg |
726 |
Q |
| |
|
|| |
|
|
| T |
43076722 |
gg |
43076721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 581 - 726
Target Start/End: Complemental strand, 43087093 - 43086948
Alignment:
| Q |
581 |
aatcccaacgataacatcggtgtatactacgatcgtctcgatacttacatgacctaccggagccaacagattacttaccggaccgccataccgccttctt |
680 |
Q |
| |
|
||||||||| |||| |||||| | |||||||||||||| ||| ||||| | || |||||||||||||| ||||||||| | ||||||||||| || || | |
|
|
| T |
43087093 |
aatcccaacaataaaatcggtatctactacgatcgtcttgattcttacgtcacataccggagccaacaaattacttacagaaccgccatacctccgtcgt |
43086994 |
T |
|
| Q |
681 |
accaaggacacaatgagtatgacgtttggtctccgtttgtttacgg |
726 |
Q |
| |
|
| || |||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
43086993 |
atcagggacacaaagaggttgatgtttggtctccgtttgtttacgg |
43086948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 581 - 726
Target Start/End: Complemental strand, 43090764 - 43090619
Alignment:
| Q |
581 |
aatcccaacgataacatcggtgtatactacgatcgtctcgatacttacatgacctaccggagccaacagattacttaccggaccgccataccgccttctt |
680 |
Q |
| |
|
||||||||| |||| |||||| | |||||||||||||| ||| ||||| | || |||||||||||||| ||||||||| | ||||||||||| || || | |
|
|
| T |
43090764 |
aatcccaacaataaaatcggtatctactacgatcgtcttgattcttacgtcacataccggagccaacaaattacttacagaaccgccatacctccgtcgt |
43090665 |
T |
|
| Q |
681 |
accaaggacacaatgagtatgacgtttggtctccgtttgtttacgg |
726 |
Q |
| |
|
| || |||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
43090664 |
atcagggacacaaagaggttgatgtttggtctccgtttgtttacgg |
43090619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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