View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18214_high_2 (Length: 587)

Name: NF18214_high_2
Description: NF18214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18214_high_2
NF18214_high_2
[»] chr2 (7 HSPs)
chr2 (1-352)||(6307098-6307437)
chr2 (460-570)||(6306732-6306842)
chr2 (302-353)||(39423894-39423942)
chr2 (302-352)||(2318890-2318937)
chr2 (302-352)||(3555251-3555298)
chr2 (302-352)||(9076447-9076494)
chr2 (302-352)||(36755468-36755515)
[»] scaffold0128 (1 HSPs)
scaffold0128 (463-570)||(20666-20773)
[»] chr4 (6 HSPs)
chr4 (464-570)||(39538933-39539039)
chr4 (302-352)||(147320-147367)
chr4 (302-352)||(18831350-18831397)
chr4 (302-352)||(18831697-18831744)
chr4 (302-352)||(46661294-46661341)
chr4 (302-352)||(51692899-51692946)
[»] chr7 (10 HSPs)
chr7 (463-570)||(33809118-33809225)
chr7 (302-352)||(2640179-2640226)
chr7 (302-352)||(48788804-48788851)
chr7 (302-352)||(5457287-5457334)
chr7 (302-352)||(13386127-13386174)
chr7 (302-352)||(24389165-24389212)
chr7 (302-352)||(27396975-27397022)
chr7 (302-352)||(28469011-28469058)
chr7 (302-352)||(28469388-28469435)
chr7 (302-352)||(45010984-45011031)
[»] chr5 (13 HSPs)
chr5 (302-352)||(16156856-16156903)
chr5 (302-352)||(20840817-20840864)
chr5 (288-353)||(5024006-5024068)
chr5 (302-352)||(5993890-5993937)
chr5 (302-352)||(6150455-6150502)
chr5 (299-353)||(11740685-11740736)
chr5 (302-352)||(14194424-14194471)
chr5 (302-352)||(16157235-16157282)
chr5 (302-352)||(18247087-18247134)
chr5 (302-352)||(20814137-20814184)
chr5 (302-352)||(20814515-20814562)
chr5 (302-352)||(20840534-20840581)
chr5 (302-352)||(21265522-21265569)
[»] chr3 (9 HSPs)
chr3 (302-352)||(42342792-42342839)
chr3 (304-353)||(46475159-46475205)
chr3 (302-352)||(9294338-9294385)
chr3 (302-352)||(33689383-33689430)
chr3 (302-352)||(33689759-33689806)
chr3 (302-352)||(40033836-40033883)
chr3 (302-352)||(40758148-40758195)
chr3 (302-352)||(41558009-41558056)
chr3 (291-353)||(53756734-53756793)
[»] chr1 (14 HSPs)
chr1 (302-352)||(41098734-41098781)
chr1 (302-352)||(183222-183269)
chr1 (302-352)||(6367563-6367610)
chr1 (302-352)||(17661853-17661900)
chr1 (302-352)||(19515820-19515867)
chr1 (302-352)||(23209707-23209754)
chr1 (302-352)||(24009576-24009623)
chr1 (302-352)||(26024424-26024471)
chr1 (302-352)||(30711707-30711754)
chr1 (302-352)||(32917640-32917687)
chr1 (302-352)||(34464450-34464497)
chr1 (301-351)||(35152711-35152758)
chr1 (302-352)||(36694283-36694330)
chr1 (302-352)||(36710384-36710431)
[»] scaffold0775 (1 HSPs)
scaffold0775 (302-353)||(4963-5011)
[»] chr8 (4 HSPs)
chr8 (302-353)||(33357499-33357547)
chr8 (302-352)||(16388584-16388631)
chr8 (294-352)||(38956052-38956107)
chr8 (302-352)||(39071677-39071724)
[»] scaffold0707 (1 HSPs)
scaffold0707 (302-352)||(6459-6506)
[»] chr6 (4 HSPs)
chr6 (302-352)||(3059636-3059683)
chr6 (302-352)||(30726139-30726186)
chr6 (302-352)||(33517914-33517961)
chr6 (302-352)||(33647331-33647378)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 6307437 - 6307098
Alignment:
Q  1 ttaggcactatttgcttttgatgagagtccaattatgtccgaccaaatgattccaccacaaagtacaggaaaggtaagaagttgatttctttgtctgcaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6307437 ttaggcactatttacttttgatgagagtccaattatgtccgaccaaatgattccaccacaaagtacaggaaaggtaagaagttgatttctttgtctgcaa 6307338  T
Q  101 ttttataggtatacatgatccaagaacaaaatgagtgaaagatgtgcacgggggtttgaaaatatgtataactttttatcattacttagccaagttcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6307337 ttttataggtatacatgatccaagaacaaaatgagtgaaagatgtgcacgggggtttgaaagtatgtataactttttatcattacttagccaagttcatt 6307238  T
Q  201 gaactctaatgagaaacagttttgtgcggttagatattgtttacattcacatagtcaataagtcaataaattggcggagcagttcaaatatttttaaatt 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  6307237 gaactctaatgagaaacagttttgtgcagttagatattgtttacattcacatagtca--------ataaattggcggagcagttcaaatatttttaaatt 6307146  T
Q  301 agcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
     ||||||||||||||||||    |||| ||||||| ||||||||||||||||    
T  6307145 ggcttaaatatgtatttca----tcttgcaattagtggtcgtttaaaaattg 6307098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 460 - 570
Target Start/End: Complemental strand, 6306842 - 6306732
Alignment:
Q  460 aaccgaagcaaactcattcagtatcacttctcgacctgaagaatccgtagctaattcaaatccttctttcacggacaacgtcgccaccaaagatattcac 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  6306842 aaccgaagcaaactcattcagtatcacttctcgacctgaagaatccgtcgctaattcaaatccttctttcaccgacggcgtcgccaccaaagatattcac 6306743  T
Q  560 atcgatccttt 570  Q
    |||||||||||    
T  6306742 atcgatccttt 6306732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 39423942 - 39423894
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattga 353  Q
    |||||||||||||||||||    ||| |||||||||||||||||||||||||    
T  39423942 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattga 39423894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 2318937 - 2318890
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||  |||   ||||||||||||||||||||||||    
T  2318937 gcttaaatatgtatttcatccttc---caattaggggtcgtttaaaaattg 2318890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 3555251 - 3555298
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  3555251 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 3555298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 9076494 - 9076447
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||| ||   |||| ||||||||||||||||||||||||    
T  9076494 gcttaaatatgtattttat---tcttgcaattaggggtcgtttaaaaattg 9076447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 36755515 - 36755468
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  36755515 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 36755468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 463 - 570
Target Start/End: Complemental strand, 20773 - 20666
Alignment:
Q  463 cgaagcaaactcattcagtatcacttctcgacctgaagaatccgtagctaattcaaatccttctttcacggacaacgtcgccaccaaagatattcacatc 562  Q
    |||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||    
T  20773 cgaagcaaactcattcggtatcacttctccacccgaagaatccgtcgctaattcaaatccttctttcaccgacagcatcgccaccaaagatattcacatc 20674  T
Q  563 gatccttt 570  Q
    ||||||||    
T  20673 gatccttt 20666  T

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Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 464 - 570
Target Start/End: Complemental strand, 39539039 - 39538933
Alignment:
Q  464 gaagcaaactcattcagtatcacttctcgacctgaagaatccgtagctaattcaaatccttctttcacggacaacgtcgccaccaaagatattcacatcg 563  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||    
T  39539039 gaagcaaactcattcggtatcacttctccacccgaagaatccgtcgctaattcaaatccttctttcaccgacggcgttgccaccaaagatattcacatcg 39538940  T
Q  564 atccttt 570  Q
    |||||||    
T  39538939 atccttt 39538933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 147320 - 147367
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    | ||||||||||||||||||||||||||    
T  147320 gcttaaatatgtatttcatc---cctacaattaggggtcgtttaaaaattg 147367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 18831350 - 18831397
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||| ||    ||||||||||||||||||||||||||||    
T  18831350 gcttaaatatgtatttgatc---cttacaattaggggtcgtttaaaaattg 18831397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 18831744 - 18831697
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  18831744 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 18831697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 46661341 - 46661294
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  46661341 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 46661294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 51692946 - 51692899
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  51692946 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 51692899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 463 - 570
Target Start/End: Complemental strand, 33809225 - 33809118
Alignment:
Q  463 cgaagcaaactcattcagtatcacttctcgacctgaagaatccgtagctaattcaaatccttctttcacggacaacgtcgccaccaaagatattcacatc 562  Q
    |||||||||||||||| |||||||||||||||| || |||| ||| ||||||||||||||||||||||| |||  ||||||||| |||||||||||||||    
T  33809225 cgaagcaaactcattcggtatcacttctcgacccgatgaatgcgtcgctaattcaaatccttctttcaccgacggcgtcgccacaaaagatattcacatc 33809126  T
Q  563 gatccttt 570  Q
    ||||||||    
T  33809125 gatccttt 33809118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 2640179 - 2640226
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||    
T  2640179 gcttaaatatgtatttcatc---cttacaattaggggtcgtttaaaaattg 2640226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 48788804 - 48788851
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||   |||| ||||||||||||||||||||||||    
T  48788804 gcttaaatatgtatttcat---tcttgcaattaggggtcgtttaaaaattg 48788851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 5457334 - 5457287
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  5457334 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 5457287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 13386174 - 13386127
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||| |||   ||| ||||||||||||||||||||||||    
T  13386174 gcttaaatatgtatttaata---cttgcaattaggggtcgtttaaaaattg 13386127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 24389212 - 24389165
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  24389212 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 24389165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 27397022 - 27396975
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  27397022 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 27396975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 28469011 - 28469058
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  28469011 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 28469058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 28469435 - 28469388
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  28469435 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 28469388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 45011031 - 45010984
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  45011031 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 45010984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 16156856 - 16156903
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    ||||||||||||||||||||   ||| ||||||||||||||||||||||||    
T  16156856 gcttaaatatgtatttcata---cttgcaattaggggtcgtttaaaaattg 16156903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 20840864 - 20840817
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||    
T  20840864 gcttaaatatgtatttcatc---cttacaattaggggtcgtttaaaaattg 20840817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 5024006 - 5024068
Alignment:
Q  288 atatttttaaattagcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattga 353  Q
    |||||||||  || |||||||||||||||||||    ||| |||||||||||||||||||||||||    
T  5024006 atatttttatcttggcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattga 5024068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 5993890 - 5993937
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  5993890 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 5993937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 6150455 - 6150502
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  6150455 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 6150502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 11740685 - 11740736
Alignment:
Q  299 ttagcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattga 353  Q
    |||| |||||||||||||||||    ||| |||||||||||||||||||||||||    
T  11740685 ttagtttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattga 11740736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 14194424 - 14194471
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  14194424 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 14194471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 16157282 - 16157235
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  16157282 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 16157235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 18247087 - 18247134
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  18247087 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 18247134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 20814137 - 20814184
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||||||||||| ||||||||||||||||    
T  20814137 gcttaaatatgtatttcatc---cttacaattagaggtcgtttaaaaattg 20814184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 20814562 - 20814515
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  20814562 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 20814515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 20840534 - 20840581
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  20840534 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 20840581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 21265569 - 21265522
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    |||||||||| |||||||||||||||||    
T  21265569 gcttaaatatgtatttcatc---cttacaattaagggtcgtttaaaaattg 21265522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 42342792 - 42342839
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||    
T  42342792 gcttaaatatgtatttcatc---cttacaattaggggtcgtttaaaaattg 42342839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 46475205 - 46475159
Alignment:
Q  304 ttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattga 353  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||    
T  46475205 ttaaatatgtatttcatc---cttacaattaggggtcgtttaaaaattga 46475159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 9294385 - 9294338
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  9294385 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 9294338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 33689383 - 33689430
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  33689383 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 33689430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 33689806 - 33689759
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    ||||||||||||||||||| |||    ||||||||||||||||||||||||    
T  33689806 gcttaaatatgtatttcatctttg---caattaggggtcgtttaaaaattg 33689759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 40033883 - 40033836
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  40033883 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 40033836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 40758148 - 40758195
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  40758148 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 40758195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 41558009 - 41558056
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||   |||| |||||| |||||||||||||||||    
T  41558009 gcttaaatatgtatttcat---tcttgcaattatgggtcgtttaaaaattg 41558056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 53756734 - 53756793
Alignment:
Q  291 tttttaaattagcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattga 353  Q
    ||||| |||| | ||||||||||||||||| |||    |||||||||||||||||||||||||    
T  53756734 ttttttaatttgtttaaatatgtatttcatctttg---caattaggggtcgtttaaaaattga 53756793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 41098734 - 41098781
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||   |||| ||||||||||||||||||||||||    
T  41098734 gcttaaatatgtatttcat---tcttgcaattaggggtcgtttaaaaattg 41098781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 183222 - 183269
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||| ||    ||||||||||||||||||||||||||||    
T  183222 gcttaaatatgtatttgatc---cttacaattaggggtcgtttaaaaattg 183269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 6367563 - 6367610
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  6367563 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 6367610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 17661853 - 17661900
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  17661853 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 17661900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 19515820 - 19515867
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  19515820 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 19515867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 23209754 - 23209707
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  23209754 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 23209707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 24009576 - 24009623
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  24009576 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 24009623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 26024424 - 26024471
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||| ||   |||| ||||||||||||||||||||||||    
T  26024424 gcttaaatatgtatttgat---tcttgcaattaggggtcgtttaaaaattg 26024471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 30711754 - 30711707
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  30711754 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 30711707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 32917687 - 32917640
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||   |||| |||||| |||||||||||||||||    
T  32917687 gcttaaatatgtatttcat---tcttgcaattaagggtcgtttaaaaattg 32917640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 34464450 - 34464497
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  34464450 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 34464497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 35152758 - 35152711
Alignment:
Q  301 agcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaatt 351  Q
    ||||||||||||||||||||    ||| |||||||||||||||||||||||    
T  35152758 agcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaatt 35152711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 36694283 - 36694330
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  36694283 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 36694330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 36710384 - 36710431
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  36710384 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 36710431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 4963 - 5011
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattga 353  Q
    |||||||||||||||||||    | |||||||||||||||||||||||||||    
T  4963 gcttaaatatgtatttcatc---cctacaattaggggtcgtttaaaaattga 5011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 33357499 - 33357547
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattga 353  Q
    |||||||||||||||||||    ||| |||||||||||||||||||||||||    
T  33357499 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattga 33357547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 16388584 - 16388631
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  16388584 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 16388631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 38956107 - 38956052
Alignment:
Q  294 ttaaattagcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    ||||||| |||||||||||||||| ||    ||| ||||||||||||||||||||||||    
T  38956107 ttaaattggcttaaatatgtatttgatc---cttgcaattaggggtcgtttaaaaattg 38956052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 39071677 - 39071724
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  39071677 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 39071724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 6506 - 6459
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  6506 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 6459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 3059683 - 3059636
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  3059683 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 3059636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 30726186 - 30726139
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  30726186 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 30726139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 33517961 - 33517914
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  33517961 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 33517914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 33647378 - 33647331
Alignment:
Q  302 gcttaaatatgtatttcatatttcttacaattaggggtcgtttaaaaattg 352  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||||||    
T  33647378 gcttaaatatgtatttcatc---cttgcaattaggggtcgtttaaaaattg 33647331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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