View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18214_high_3 (Length: 278)
Name: NF18214_high_3
Description: NF18214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18214_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 27430278 - 27430027
Alignment:
| Q |
19 |
ttgacaactctttcccaacaccagccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430278 |
ttgacaactctttcccaacaccagccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaa |
27430179 |
T |
|
| Q |
119 |
ggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430178 |
ggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgat |
27430079 |
T |
|
| Q |
219 |
tctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430078 |
tctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
27430027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 96 - 270
Target Start/End: Complemental strand, 27447478 - 27447304
Alignment:
| Q |
96 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
195 |
Q |
| |
|
|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27447478 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatg |
27447379 |
T |
|
| Q |
196 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
27447378 |
tcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
27447304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 27447525 - 27447476
Alignment:
| Q |
19 |
ttgacaactctttcccaacaccagccaaacaagattgcccttttctctca |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
27447525 |
ttgacaactctttcccaacaccagccaaacaagactgtccttttctctca |
27447476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University