View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18214_low_3 (Length: 362)
Name: NF18214_low_3
Description: NF18214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18214_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 65 - 362
Target Start/End: Original strand, 3808207 - 3808504
Alignment:
| Q |
65 |
gaaagagagatcaattaaagtggcaacataaacatttactttaaaccaaaaattctaaagtataatcctcaccgtacgatttgccttagcaatttttaga |
164 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3808207 |
gaaagagagatcaatttaagtagcaacataaacatttactttaaaccaaaaactccaaagtataatcctcaccgtacgatttgccttagcaatttttaga |
3808306 |
T |
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| Q |
165 |
agcatgtttaaacatgcttttgtcctctttcccatgactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatccca |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3808307 |
agcatgtttaaacatgcttttgtcctctttcccatgactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatccca |
3808406 |
T |
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| Q |
265 |
acagaagttacgtcaaatataataacactaaactttggaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatga |
362 |
Q |
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| T |
3808407 |
acagaagttacgtcaaatataataacactaaactttggaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatga |
3808504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 3808048 - 3808083
Alignment:
| Q |
33 |
atacatttgttaaacaagataatcaaccacacgaaa |
68 |
Q |
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| T |
3808048 |
atacatttgttaaacaagataatcaaccacacgaaa |
3808083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 201 - 359
Target Start/End: Original strand, 29838248 - 29838405
Alignment:
| Q |
201 |
actaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaacttt |
300 |
Q |
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| T |
29838248 |
actaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataataacactaaacttt |
29838347 |
T |
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| Q |
301 |
ggaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattcta |
359 |
Q |
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| T |
29838348 |
-gaattcccttcatatttgaaagaaatgaagcaaccatatcctatagaataatattcta |
29838405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 358
Target Start/End: Original strand, 224853 - 225008
Alignment:
| Q |
202 |
ctaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttg |
301 |
Q |
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|||||| ||| |||||||| ||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
224853 |
ctaggacactctgtgtttgtttctccattagtacttggagttttgagtggatagcaaatctcaacagaagttacatcaaatataataacactaaacttt- |
224951 |
T |
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| Q |
302 |
gaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattct |
358 |
Q |
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| T |
224952 |
gaattcccttcatatttgaaagacatgaagcaaccatatcttaaagaatagtattct |
225008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 197105 - 197249
Alignment:
| Q |
211 |
tttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttcct |
310 |
Q |
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|||||||||||||||| |||| |||||||||||| || ||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
197105 |
tttgtgtttggttctccattaacacttggagtttttaatggataacaaatctcaacataagttacgtcaaatataataacactaaacttt-gaattccct |
197203 |
T |
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| Q |
311 |
tcataattgaaagaaaggtaccaaccatatcctattgagtagtatt |
356 |
Q |
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|| || |||||||| ||||| |||||||| |||| ||| ||||||| |
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| T |
197204 |
tcgtatttgaaagataggtagcaaccataccctaatgaatagtatt |
197249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 217 - 344
Target Start/End: Complemental strand, 205082 - 204956
Alignment:
| Q |
217 |
tttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttcataa |
316 |
Q |
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|||| ||||| ||||||||| |||||||||| |||||||||||| |||| |||||||| |||||||||| ||||||||||||| ||||||||||| || |
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| T |
205082 |
tttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttacatcaaatataacaacactaaacttt-gaatttccttcgtat |
204984 |
T |
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| Q |
317 |
ttgaaagaaaggtaccaaccatatccta |
344 |
Q |
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|||||||| ||||| |||||| |||||| |
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| T |
204983 |
ttgaaagataggtagcaaccacatccta |
204956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 322
Target Start/End: Original strand, 221917 - 222038
Alignment:
| Q |
200 |
gactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactt |
299 |
Q |
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||||| || |||||||||||| ||||| |||| ||||| |||||||||| |||||||||||| ||||||||||||| |||||||||| |||| ||||||| |
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| T |
221917 |
gactatgacactttgtgtttgtttctccattaatactttgagttttgaatggatagcaaatctcaacagaagttacatcaaatataacaacattaaactt |
222016 |
T |
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| Q |
300 |
tggaatttccttcataattgaaa |
322 |
Q |
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| T |
222017 |
t-gaatccccttcatatttgaaa |
222038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 358
Target Start/End: Original strand, 216972 - 217129
Alignment:
| Q |
200 |
gactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactt |
299 |
Q |
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||||| || ||||||| |||| ||||| ||| |||||| |||||||||| |||||||||||| ||| ||||||| | |||||||||| ||||||||||| |
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| T |
216972 |
gactatgaaactttgtttttgtttctccatttgtactttgagttttgaatggatagcaaatctcaatagaagttgcatcaaatataaagacactaaactt |
217071 |
T |
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| Q |
300 |
tggaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattct |
358 |
Q |
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| |||| |||||||| |||||| | ||| | ||||||| ||||| || ||||||||| |
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| T |
217072 |
t-gaatccccttcatatttgaaacacaggaaggaaccataccctatagaatagtattct |
217129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 358
Target Start/End: Original strand, 210383 - 210526
Alignment:
| Q |
214 |
gtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttca |
313 |
Q |
| |
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||||||| ||||| | |||||||||||||||| || ||||||||||| ||||||||||| | |||||||||||||| ||||| ||| ||||| ||||| |
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| T |
210383 |
gtgtttgtttctccactagtacttggagtttttaatggatagcaaatttcaacagaagttgcatcaaatataataacgctaaaattt-gaattcccttcg |
210481 |
T |
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| Q |
314 |
taattgaaagaaaggtaccaaccatatcctattgagtagtattct |
358 |
Q |
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|| ||||||| ||| | ||||| |||| || || ||||||||| |
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| T |
210482 |
tatctgaaagacaggaagcaaccgtatcttaaagaatagtattct |
210526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 322
Target Start/End: Original strand, 198274 - 198372
Alignment:
| Q |
223 |
tctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttcataattgaaa |
322 |
Q |
| |
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|||| ||||||||||||||||||||| | ||| ||||| ||||||||||| ||| |||||| |||| |||||||| ||||| |||| ||| |||||| |
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| T |
198274 |
tctccattagtacttggagttttgaatgaataagaaatctcaacagaagttgtatcatatataacaacattaaacttt-gaattcccttgatagttgaaa |
198372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 217 - 356
Target Start/End: Original strand, 6903411 - 6903549
Alignment:
| Q |
217 |
tttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttcataa |
316 |
Q |
| |
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|||| ||||| ||||||||| |||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||| || |
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| T |
6903411 |
tttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttacatcaaatataataacactaaacttt-gaatttccttcgtat |
6903509 |
T |
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| Q |
317 |
ttgaaagaaaggtaccaaccatatcctattgagtagtatt |
356 |
Q |
| |
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|||||||| ||||| ||||||||||||| ||| ||||||| |
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| T |
6903510 |
ttgaaagataggtagcaaccatatcctaatgaatagtatt |
6903549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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