View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18214_low_6 (Length: 232)
Name: NF18214_low_6
Description: NF18214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18214_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 31941987 - 31941787
Alignment:
| Q |
19 |
aaaaaattcattttgaatttgtttaaccgcgcgctggtaagaaagaaggacgactgaccaggcaagaagagcatgagaggagaattatcccactgtgaac |
118 |
Q |
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| T |
31941987 |
aaaaaattcattt-gaatttgtttaaccgc----tggtaagaaagaaggactactgaccaggcaagaagagcatgagaggagaattatcccactgtgaac |
31941893 |
T |
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| Q |
119 |
tggactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgcttggtcaaagtattccttccaaccgctccgtctctgctc |
218 |
Q |
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| T |
31941892 |
tgcactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgcttgctcaaagtattccttccaaccgctccgtctctgctt |
31941793 |
T |
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| Q |
219 |
ctcctc |
224 |
Q |
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|||||| |
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| T |
31941792 |
ctcctc |
31941787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 31956167 - 31956019
Alignment:
| Q |
75 |
accaggcaagaagagcatgagaggagaattatcccactgtgaactggactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactct |
174 |
Q |
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| T |
31956167 |
accaggcaagaagagtatgagaggagaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtcctcttcaatcaactct |
31956068 |
T |
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| Q |
175 |
ttcgcttggtcaaagtattccttccaaccgctccgtctctgctcctcct |
223 |
Q |
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| T |
31956067 |
ttcgcttgctcaaagtattcttcccaaccgctccgtctctgcttctcct |
31956019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 31968039 - 31967904
Alignment:
| Q |
82 |
aagaagagcatgagaggagaattatcccactgtgaactggactccaacggcgaaaaccaccgcggaggtccatcgtctg---tttcgatcaactctttcg |
178 |
Q |
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| T |
31968039 |
aagaagagcataagaggagaattatccaaccgcgaaccacactccgacggcgaaaaccaccgcggaggtccaccgtcagcaactccgataaactccttcg |
31967940 |
T |
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| Q |
179 |
cttggtcaaagtattccttccaaccgctccgtctct |
214 |
Q |
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| T |
31967939 |
catgctcaaaatattccttccaaccggtccgtctct |
31967904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 49789512 - 49789548
Alignment:
| Q |
122 |
actccaacggcgaaaaccaccgcggaggtccatcgtc |
158 |
Q |
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| T |
49789512 |
actccaacggcgataaccaccgcggaggtccaccgtc |
49789548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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