View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18215_high_1 (Length: 572)

Name: NF18215_high_1
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18215_high_1
NF18215_high_1
[»] chr5 (18 HSPs)
chr5 (1-556)||(8527501-8528052)
chr5 (1-183)||(8534092-8534274)
chr5 (368-538)||(8534438-8534610)
chr5 (362-556)||(8640449-8640644)
chr5 (239-331)||(1601230-1601322)
chr5 (321-455)||(9075303-9075444)
chr5 (361-486)||(8643506-8643630)
chr5 (363-479)||(8636090-8636206)
chr5 (1-109)||(1601461-1601571)
chr5 (2-109)||(8545473-8545582)
chr5 (363-436)||(9002283-9002356)
chr5 (361-447)||(8549058-8549145)
chr5 (245-316)||(15618505-15618576)
chr5 (492-550)||(2846187-2846245)
chr5 (492-550)||(2858008-2858066)
chr5 (413-486)||(8677342-8677415)
chr5 (509-553)||(2875609-2875653)
chr5 (297-344)||(8534365-8534412)
[»] chr4 (2 HSPs)
chr4 (274-556)||(9441937-9442219)
chr4 (1-103)||(9441835-9441937)
[»] chr7 (4 HSPs)
chr7 (239-551)||(48362640-48362959)
chr7 (1-134)||(48363068-48363203)
chr7 (256-434)||(35777257-35777444)
chr7 (374-431)||(48362528-48362584)
[»] chr1 (3 HSPs)
chr1 (412-556)||(26324439-26324584)
chr1 (369-495)||(5129794-5129920)
chr1 (291-420)||(26324948-26325080)
[»] chr8 (1 HSPs)
chr8 (448-501)||(44438409-44438462)


Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 8527501 - 8528052
Alignment:
Q  1 tcagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgataaagaaaaacacataggagatcaggaaacagaatgaaatagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  8527501 tcagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgatgaagaaaagcacataggagatcaggaaacagaatgaaatagc 8527600  T
Q  101 tgagcaataatctgactttttctaaaccaagccagcctccttaaagcacagataatgattaatgaacatctagattaaattttacnnnnnnnnngacatc 200  Q
     ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  8527601 cgagtaataatcagactttttctaaaccaagccagcctccttaaagcacagataatgattaatgaacatctagattaaattttacaaaaaaa--gacatc 8527698  T
Q  201 atttgcatcttaaaatgagatttgtannnnnnnnnnncaaaatcacaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaa 300  Q
    ||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8527699 atttgcatcttaaaatgagatttgtagtttttttt--caaaatcacaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaa 8527796  T
Q  301 ttccttcttatcagctgtactcttcaccaaaagcctcaccaccggaggaagaagtcaaaacatcattcaagatcttcattttcttcatgcaatttaatat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8527797 ttccttcttatcagctgtactcttcaccaaaagcctcaccaccggaggaagaagtcaaaacatcattcaagatcttcatcttcttcatgcaatttaatat 8527896  T
Q  401 ttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagcaagggtcagaatacaaatcaatacgaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  8527897 ttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagcaggggtcagaataccaatcaatacgaa 8527996  T
Q  501 agcagacgtactcttcttaggaagcaggctcttcaccaaactcttcaccatcagat 556  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8527997 agcagacgtactcttcttaggaagcaggctcttcgccaaactcttcaccatcagat 8528052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 8534092 - 8534274
Alignment:
Q  1 tcagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgataaagaaaaacacataggagatcaggaaacagaatgaaatagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8534092 tcagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgatgaagaaaaacacataggagatcaggaaacagaatgaaatagc 8534191  T
Q  101 tgagcaataatctgactttttctaaaccaagccagcctccttaaagcacagataatgattaatgaacatctagattaaatttt 183  Q
    |||||||||||| | ||||||||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  8534192 tgagcaataatcagtctttttctaaatcaagacagcctcgttaaagcatagataatgattaatgaacatctagattaaatttt 8534274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 368 - 538
Target Start/End: Original strand, 8534438 - 8534610
Alignment:
Q  368 caagatcttcattttcttcatgcaatttaata--tttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattg 465  Q
    ||||||||||||||||||||||||| |||| |  |||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  8534438 caagatcttcattttcttcatgcaaattaaaaaatttgaacacctatataaaataacaccaatattacatgacgaagtctaagtaacatacctaaaattg 8534537  T
Q  466 taataagcaagggtcagaatacaaatcaatacgaaagcagacgtactcttcttaggaagcaggctcttcacca 538  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8534538 taataagcaagggtcagaataacaatcaatacgaaagcagacgtactcttcttaggaagcaggttcttcacca 8534610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 362 - 556
Target Start/End: Original strand, 8640449 - 8640644
Alignment:
Q  362 atcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaa 461  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||  |||  ||||||||||||||||| | ||||||    
T  8640449 atcattcaagatcttcattttcttcacgcaatttaaattttgcacacctatataaaataacaccaatggtacgaaacaaagtctaagtaacgtgcctaaa 8640548  T
Q  462 attgtaataagcaagggtcagaatacaaatcaatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaaactc-ttcaccatcagat 556  Q
    |||||| |||||| |||||| ||||||||||||| | |||  | ||||||||||||||  |||| ||  |||||||||| || |||||||||||||    
T  8640549 attgtagtaagcaggggtcaaaatacaaatcaatgcaaaaataaacgtactcttcttaacaagcgggtccttcaccaaaatcattcaccatcagat 8640644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 1601322 - 1601230
Alignment:
Q  239 aaaatcacaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 331  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601322 aaaatcgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 1601230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 321 - 455
Target Start/End: Complemental strand, 9075444 - 9075303
Alignment:
Q  321 tcttcaccaaaagcctcaccaccggaggaagaag-------tcaaaacatcattcaagatcttcattttcttcatgcaatttaatatttgcacacctata 413  Q
    |||||||||||||||||||||| |||||||||||       | || ||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  9075444 tcttcaccaaaagcctcaccactggaggaagaagatatttgttaagacatcattcaagatcttcattctcttcatgcaatttaaaatttgcacacctata 9075345  T
Q  414 taaaataacaccaatattacataacaaagtctaagtaacata 455  Q
    |||||||||| || ||||||| ||||||||||||||||||||    
T  9075344 taaaataacaacagtattacacaacaaagtctaagtaacata 9075303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 361 - 486
Target Start/End: Original strand, 8643506 - 8643630
Alignment:
Q  361 catcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaa 460  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||| || | || ||||||||  | |||||    
T  8643506 catcattcaagatcttcatttttttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaa 8643604  T
Q  461 aattgtaataagcaagggtcagaata 486  Q
    ||||||| || |||||||||||||||    
T  8643605 aattgtagtatgcaagggtcagaata 8643630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 363 - 479
Target Start/End: Original strand, 8636090 - 8636206
Alignment:
Q  363 tcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaa 462  Q
    |||||||||||||||||||||||||   ||||||| ||||||| |||||||||||||||| |||||||||| ||||| || || |||||  |||||||||    
T  8636090 tcattcaagatcttcattttcttcacttaatttaaaatttgcatacctatataaaataacgccaatattacgtaacagagccttagtaatgtacctaaaa 8636189  T
Q  463 ttgtaataagcaagggt 479  Q
    ||||| |||||||||||    
T  8636190 ttgtattaagcaagggt 8636206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 1601571 - 1601461
Alignment:
Q  1 tcagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgataaagaaaaacac--ataggagatcaggaaacagaatgaaata 98  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||||||||  ||||||| ||| |||||||  ||||||||||  ||||||||| ||||||    
T  1601571 tcagaaacccttttcaaggagcagttaaagactaagaatcaaggaaatcaggattgatgaagtaaaacacatataggagatcgagaaacagaacgaaata 1601472  T
Q  99 gctgagcaata 109  Q
    || ||||||||    
T  1601471 gccgagcaata 1601461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 8545582 - 8545473
Alignment:
Q  2 cagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgataaagaaaaacacata--ggagatcaggaaacagaatgaaatag 99  Q
    ||||||| ||||||||||||||||||| ||| | ||||  ||||||||  ||||||| ||| ||||||||||  ||||||| ||||||||||||||||||    
T  8545582 cagaaactcttttcaaggagcagttaaagacgaagaataaaggaaatcaggattgatgaagtaaaacacatataggagatcgggaaacagaatgaaatag 8545483  T
Q  100 ctgagcaata 109  Q
    ||||||||||    
T  8545482 ctgagcaata 8545473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 9002283 - 9002356
Alignment:
Q  363 tcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacata 436  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||||||| |||| |||||||||||||||||    
T  9002283 tcattcaagatcttcattttcttcacgcaatttaaactttgcacacctatacaaaacaacaccaatattacata 9002356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 361 - 447
Target Start/End: Complemental strand, 8549145 - 8549058
Alignment:
Q  361 catcattcaagatcttcattttcttcatgcaatttaata-tttgcacacctatataaaataacaccaatattacataacaaagtctaa 447  Q
    ||||||||||||||||  ||||||| ||||||||| | | ||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  8549145 catcattcaagatctttgttttctttatgcaattttaaactttgcacgcctatacaaaataacaccaatattacataacaaaggctaa 8549058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 15618505 - 15618576
Alignment:
Q  245 acaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagct 316  Q
    |||||||||||||| ||||||||||||||||||||||| || |||||||||| |||||| ||||||| ||||    
T  15618505 acaactagccaaatgataacttgtgatttaacataaccctgtctagtgtatgtaaattctttcttattagct 15618576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 2846245 - 2846187
Alignment:
Q  492 caatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaaactcttcacca 550  Q
    |||| ||||| || |||||||||| |||||||||||||||||||||||| |||||||||    
T  2846245 caatgcgaaaacaaacgtactcttattaggaagcaggctcttcaccaaattcttcacca 2846187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 2858066 - 2858008
Alignment:
Q  492 caatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaaactcttcacca 550  Q
    |||| ||||| || |||||||||| |||||||||||||||||||||||| |||||||||    
T  2858066 caatgcgaaaacaaacgtactcttattaggaagcaggctcttcaccaaattcttcacca 2858008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 486
Target Start/End: Original strand, 8677342 - 8677415
Alignment:
Q  413 ataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagcaagggtcagaata 486  Q
    |||||||||||||||||||||| |||| || | ||||||||| |||||||||||| |||| | || ||||||||    
T  8677342 ataaaataacaccaatattacaaaacagagcccaagtaacattcctaaaattgtagtaaggacggatcagaata 8677415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 509 - 553
Target Start/End: Complemental strand, 2875653 - 2875609
Alignment:
Q  509 tactcttcttaggaagcaggctcttcaccaaactcttcaccatca 553  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||    
T  2875653 tactcttattaggaagcaggctcttcaccaaattcttcaccatca 2875609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 8534365 - 8534412
Alignment:
Q  297 gaaattccttcttatcagctgtactcttcaccaaaagcctcaccaccg 344  Q
    |||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  8534365 gaaattccttctaatcagttgtactcttcaccaaaagcgtcagcaccg 8534412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 274 - 556
Target Start/End: Original strand, 9441937 - 9442219
Alignment:
Q  274 aacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcaccaccggaggaagaagtcaaaacatcattcaagat 373  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9441937 aacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcaccaccggaggaagaagtcaaaacatcattcaagat 9442036  T
Q  374 cttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagc 473  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442037 cttcattttcttcatgtaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagc 9442136  T
Q  474 aagggtcagaatacaaatcaatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaaactcttcaccatcagat 556  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442137 aagggtcagaataccaatcaatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaaactcttcaccatcagat 9442219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9441835 - 9441937
Alignment:
Q  1 tcagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgataaagaaaaacacataggagatcaggaaacagaatgaaatagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  9441835 tcagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgatgaagaaaagcacataggagatcaggaaacagaatgaaatagc 9441934  T
Q  101 tga 103  Q
    |||    
T  9441935 tga 9441937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 239 - 551
Target Start/End: Complemental strand, 48362959 - 48362640
Alignment:
Q  239 aaaatcacaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaaagcctca 338  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  48362959 aaaatcacaactagccaaatcataacttgtgatttaacataaccctgcccagtgtatggaaattccctcttatcagttgtactcttcaccaaaggcctca 48362860  T
Q  339 ccaccggaggaagaag-------tcaaaacatcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatatt 431  Q
    ||||||||||||||||       ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  48362859 ccaccggaggaagaaggtatttgtcaaaccatcattcgagatcttcattttcttcatgtaatttaatatttgcacacctatat-aaataacacgaatatt 48362761  T
Q  432 acataacaaagtctaagtaacatacctaaaattgtaataagcaagggtcagaatacaaatcaata-cgaaagcagacgtactcttcttaggaagcaggct 530  Q
    |||||||| ||||| ||||||||| |||||||||||||| ||| ||||||||| || |||||| | ||||| ||||||||||||||||||||||  ||||    
T  48362760 acataacatagtcttagtaacataactaaaattgtaatacgcaggggtcagaaaaccaatcaaaagcgaaaacagacgtactcttcttaggaagagggct 48362661  T
Q  531 cttcaccaaactcttcaccat 551  Q
    |||||||||| ||||||||||    
T  48362660 cttcaccaaattcttcaccat 48362640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 48363203 - 48363068
Alignment:
Q  1 tcagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgataaagaaaaacacat--aggagatcaggaaacagaatgaaata 98  Q
    |||||||||||||||||||||||||||| || || ||||| |||||| |  ||||||| ||| |||||||||  ||||| ||  ||||||||||||||||    
T  48363203 tcagaaacccttttcaaggagcagttaaagattaagaatcaaggaaagcaggattgatgaagtaaaacacatctaggaggtcgagaaacagaatgaaata 48363104  T
Q  99 gctgagcaataatctgactttttctaaaccaagcca 134  Q
    ||||||||||||||   ||||||||||||| |||||    
T  48363103 gctgagcaataatcaatctttttctaaacccagcca 48363068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 256 - 434
Target Start/End: Original strand, 35777257 - 35777444
Alignment:
Q  256 aatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcaccaccggagga-aga-- 352  Q
    |||||||| |||||||||| |||| ||||||||| |||||||||||| |||| ||  || |||||||||| |||||||| ||||||||| |||| |||      
T  35777257 aatcataaattgtgatttagcatagccatgcctactgtatggaaattacttcataatagttgtactcttcgccaaaagcgtcaccaccgaaggagagagg 35777356  T
Q  353 -----agtcaaaacatcattcaagatcttcattttcttcatgcaatttaata-tttgcacacctatataaaataacaccaatattaca 434  Q
          |||||  ||||||||||||||||||||| |||  |||| ||||| | |||||||  ||||| ||||||||||||||||||||    
T  35777357 atacttgtcaagtcatcattcaagatcttcatttacttactgcagtttaaaactttgcacgactatacaaaataacaccaatattaca 35777444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 48362584 - 48362528
Alignment:
Q  374 cttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatatt 431  Q
    |||| |||||||| ||||||||||  |||||||||||||||||| ||| |||||||||    
T  48362584 cttccttttcttcctgcaatttaaactttgcacacctatataaattaa-accaatatt 48362528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 412 - 556
Target Start/End: Complemental strand, 26324584 - 26324439
Alignment:
Q  412 tataaaataacaccaatattacataacaaagtctaagt-aacatacctaaaattgtaataagcaagggtcagaatacaaatcaatacgaaagcagacgta 510  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  26324584 tataaaataacaccaatattacataacaaagtctaagttaacatacctaaaattgtaataagcaagggtcagaataccaatcaatacgaaaacagacgta 26324485  T
Q  511 ctcttcttaggaagcaggctcttcaccaaactcttcaccatcagat 556  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||    
T  26324484 ctcttctttggaagccggctcttcaccaaactcttcaccatcagat 26324439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 5129794 - 5129920
Alignment:
Q  369 aagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaa 468  Q
    |||||||||||||  |||  |||  |||| ||||||||||||||||||||||| ||||||||||| |||||| | |||| |||  | ||||||||||||     
T  5129794 aagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaggcctaaataatgtgcctaaaattgtac 5129893  T
Q  469 taagcaagggtcagaatacaaatcaat 495  Q
    |||||| | |||||||||| |||||||    
T  5129894 taagcaggagtcagaataccaatcaat 5129920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 420
Target Start/End: Complemental strand, 26325080 - 26324948
Alignment:
Q  291 tgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcaccaccggaggaagaa-------gtcaaaacatcattcaagatcttcattttc 383  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||  ||       ||| | |||    |||||||||||||||||    
T  26325080 tgtatggaaattccttctaatcagttgtactcttcaccaaaagcctcaccacaggacgacaaaggtatttgtctataca----tcaagatcttcattttc 26324985  T
Q  384 ttcatgcaatttaatatttgcacacctatataaaata 420  Q
    ||||||||| || |  |||||||||||||||||||||    
T  26324984 ttcatgcaaattcaattttgcacacctatataaaata 26324948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 501
Target Start/End: Complemental strand, 44438462 - 44438409
Alignment:
Q  448 gtaacatacctaaaattgtaataagcaagggtcagaatacaaatcaatacgaaa 501  Q
    |||||||||||||||||||| ||||||||||||| |||||  |||||| |||||    
T  44438462 gtaacatacctaaaattgtagtaagcaagggtcaaaataccgatcaatgcgaaa 44438409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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