View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_high_11 (Length: 317)
Name: NF18215_high_11
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 42393450 - 42393166
Alignment:
| Q |
14 |
cataggaaggggcggacgcatgtaggaatatgcagtttccaaattacactccaattgcgttgaatgaattcatgagcaggttcaacaattagcaattagc |
113 |
Q |
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| T |
42393450 |
cataggaaggggcggacgcatgtaggaatatgcagtttccaaattacactccaattgcgttgaatgaattcacgagcaggttcaacaattagcaattagc |
42393351 |
T |
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| Q |
114 |
ttcatacgtaagctgtatgaagacttgacagaaaattttccatcacttgacacattccagatacgacagtccatgatatctctgctaaaaagcggcattt |
213 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42393350 |
ctcatacgtaagctgtatgaagacttgacagaatattttccatcacttgacacattccagatacgacagtccatgatatctctgctaaaaagaggcattt |
42393251 |
T |
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| Q |
214 |
gaaaaattgcatcagcatcaaaagtattaaaactagcactcctcgtgtcattgttccaagagagaagatcagaagacatcagact |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393250 |
gaaaaattgcatcagcatcaaaagtattaaaactagcactcctcgtgtcattgttccaagagagaagatcagaagacatcagact |
42393166 |
T |
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