View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_high_19 (Length: 256)
Name: NF18215_high_19
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24016822 - 24017061
Alignment:
| Q |
1 |
tcaagagtcttggactaaattatttaagattagttaccagagtcttcaatttggtgatgcttttcaaatggtttgcatttataaaaatggtgatacggtg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24016822 |
tcaagagtcttggactaaattatttaagatcagttaccagagtcttcaatttggtgatgcttttcaaatggtttgcatttataaaaatggtgatacggtg |
24016921 |
T |
|
| Q |
101 |
ataatagcaaatcaatttggccaatcagcaatgatctataatttaagtgataaaatagtagagtatattagaattaccagttacatagagtggttctatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24016922 |
ataatagcaaatcaatttggccaatcagcaatgatctataatttaagtgataaaatagtagagtatattagaattaccaattacatagagtggttctatc |
24017021 |
T |
|
| Q |
201 |
atgcaaatgattatgtaggaagcttggtgtcagttccttg |
240 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |
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| T |
24017022 |
atgcaaatgattatgtagaaagcttggtgtcagttccttg |
24017061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 26256809 - 26256921
Alignment:
| Q |
1 |
tcaagagtcttggactaaattatttaagattagttaccagagtct-tcaatttggtgatgcttttcaaatggtttgcatttataaaaatggtgatacggt |
99 |
Q |
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|||||||||||||||| |||||||||||||||| ||||| | ||| | | ||| || || ||||| ||||| ||| |||||||||||||||||| ||| |
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| T |
26256809 |
tcaagagtcttggactcaattatttaagattagctaccataatctattactttaatggtggttttcgaatggcatgcctttataaaaatggtgatatggt |
26256908 |
T |
|
| Q |
100 |
gataatagcaaat |
112 |
Q |
| |
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|||| |||||||| |
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| T |
26256909 |
gatattagcaaat |
26256921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23993569 - 23993614
Alignment:
| Q |
1 |
tcaagagtcttggactaaattatttaagattagttaccagagtctt |
46 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
23993569 |
tcaagagtcttggactcaattatttaagattagttaccagaatctt |
23993614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24035785 - 24035833
Alignment:
| Q |
1 |
tcaagagtcttggactaaattatttaagattagttaccagagtcttcaa |
49 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||| ||||||| |
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| T |
24035785 |
tcaagagtcttggactcaattatttaagattagttacaagaatcttcaa |
24035833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 15444000 - 15444044
Alignment:
| Q |
3 |
aagagtcttggactaaattatttaagattagttaccagagtcttc |
47 |
Q |
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|||||||||||||| ||||||||||||| |||||||||| ||||| |
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| T |
15444000 |
aagagtcttggactcaattatttaagatgagttaccagaatcttc |
15444044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26218001 - 26218049
Alignment:
| Q |
1 |
tcaagagtcttggactaaattatttaagattagttaccagagtcttcaa |
49 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| | ||||||| |
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|
| T |
26218001 |
tcaagagtcttggtctcaattatttaagattagttaccataatcttcaa |
26218049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26230251 - 26230291
Alignment:
| Q |
1 |
tcaagagtcttggactaaattatttaagattagttaccaga |
41 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
26230251 |
tcaagagtcttggtctcaattatttaagattagttaccaga |
26230291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 26237652 - 26237696
Alignment:
| Q |
5 |
gagtcttggactaaattatttaagattagttaccagagtcttcaa |
49 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| ||||||| |
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|
| T |
26237652 |
gagtcttggtctcaattatttaagattagttaccagaatcttcaa |
26237696 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24002233 - 24002280
Alignment:
| Q |
1 |
tcaagagtcttggactaaattatttaagattagttaccagagtcttca |
48 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| |||| |||||| |
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|
| T |
24002233 |
tcaagagtcttggactcaattacttaagattagttatcagaatcttca |
24002280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24010417 - 24010464
Alignment:
| Q |
1 |
tcaagagtcttggactaaattatttaagattagttaccagagtcttca |
48 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| |||| |||||| |
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| T |
24010417 |
tcaagagtcttggactcaattacttaagattagttatcagaatcttca |
24010464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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