View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_high_2 (Length: 570)
Name: NF18215_high_2
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 38243475 - 38244017
Alignment:
| Q |
1 |
tcatcatactacaacacaaaacaactgcaactgataaccaaagcttgactcacttttagatttccgggcatcttggcggccaaagcctcggcgaaatcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38243475 |
tcatcatactacaacacaaaacaactgcaactgataaccaaagcttgactcacttttagatttccgggcatcttggcggccaaagcctcggcgaaatcag |
38243574 |
T |
|
| Q |
101 |
caatagcatggtgtagataaatagtggttgcatgctgcaaaagtttactctgctcaaagatggcattcaaaatatcagggtgacagtgtccagcagaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38243575 |
caatagcatggtgtagataaatagtggttgcatgctgcaaaagtttactctgctcaaagatggcattcaaaatatcagggtgacagtgtccagcagaaac |
38243674 |
T |
|
| Q |
201 |
agtaacaatcccagcaaaagcatcaaggtaacgtcttccagcttcatcatacagatattgcatcttcccctccacaatattcaactatacaaacatcatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38243675 |
agtaacaatcccagcaaaagcatcaaggtaacgtcttccagcttcatcatacagatattgcatcttcccctccacaatattcaactataaaaacatcatt |
38243774 |
T |
|
| Q |
301 |
catcatcaatttcttcttctatnnnnnnnnngtaacaaacaataaatgaaattaaagaagagaaatgagtttgatgataggaactgacgggtttttgata |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38243775 |
catcatcaatttcttcttctataaaaaaaaagtaacaaacaataaatgaaattaaagaagagaaatgagtttgatgataggaactgacgggtttttgata |
38243874 |
T |
|
| Q |
401 |
gaaatggaacaaggaaggaccaaggaactgtttacgcttggcgaaaacttcatcggcggatggtccataatacggatgaggttggtgatcgaaaggcggt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38243875 |
gaaatggaacaaggaaggaccaaggaactgtttacgcttggagaaaacttcatcggcggatggtccataatacggatgaggttggtgatcgaacggcggt |
38243974 |
T |
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| Q |
501 |
atctgcggcggtggcgtagtaatggtttgagtggcggtggcgg |
543 |
Q |
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| T |
38243975 |
atctgcggcggtggcgtagtaatggtttgagtggcggtggcgg |
38244017 |
T |
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