View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_high_23 (Length: 201)
Name: NF18215_high_23
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 19469333 - 19469218
Alignment:
| Q |
71 |
aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaataataaacaggaatgcaattagcttgttaagaaccgcatcaaactc |
170 |
Q |
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| T |
19469333 |
aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaataataaacaggaatgcaattagcttgttaagaaccgcatcaaactc |
19469234 |
T |
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| Q |
171 |
ggaatcagggttgttg |
186 |
Q |
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| T |
19469233 |
gaaatcagagttgttg |
19469218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 19469432 - 19469397
Alignment:
| Q |
17 |
aagggagaacaaagaaattgcaataatcagtaaaaa |
52 |
Q |
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| T |
19469432 |
aagggagaacaaagaaattgcaataatcagtaaaaa |
19469397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 47865981 - 47866036
Alignment:
| Q |
71 |
aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaata |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47865981 |
aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaata |
47866036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 47866183 - 47866244
Alignment:
| Q |
125 |
taataaacaggaatgcaattagcttgttaagaaccgcatcaaactcggaatcagggttgttg |
186 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
47866183 |
taataaacaggaatgcaattagcctgttaagaaccgcatcaaactcggaatcagagttgttg |
47866244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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