View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_high_4 (Length: 464)
Name: NF18215_high_4
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Original strand, 42554779 - 42555216
Alignment:
| Q |
17 |
accttccatctatgtagctcatattttctggtttcatttttatgcttgatcattacgcatgatcaatgtatcataataataataatttcttttagtctca |
116 |
Q |
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| T |
42554779 |
accttccatctatgtagctcatatattctggtttcatttttatgcttgatcattacacatgatcaatgtatcataataataataatttcttttagtctca |
42554878 |
T |
|
| Q |
117 |
ttagcaaccagcttattaatatcattcgttgatctcatctcttatgcttgttcttggtttgtttttccatatcagaaaagaaattaaaggtttgttttta |
216 |
Q |
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| T |
42554879 |
ttagcaaccagcttattcatatcattcattgatctcatctcttatgcttgttcttgatttgtttttccatatcagaaaagaaattaaaggtttgttttta |
42554978 |
T |
|
| Q |
217 |
tatctggtgaaaagaaatatctctcatactaggaccttcacgccactaatacaaatatctccttaaagtgaacttgaaaagcttcttgaatttggtagag |
316 |
Q |
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| T |
42554979 |
tatctggtgaaaagaaatatctctcatactaggaccttcacgccactaatacaaatatctccttaaagtgaacttgaaaagcttcttgaatttggtagag |
42555078 |
T |
|
| Q |
317 |
gaaggtcaatctagattcagannnnnnncctaaataaatagtttcagaatctataattatatttttattttctaatctatcttacattttttgcattata |
416 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42555079 |
gaaggtcaatctagattcagatttttttcctaaataaatagtttcagaatctataattatatttttattttctaatctatcttacattttttgcattata |
42555178 |
T |
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| Q |
417 |
tggtgcaattattagcacggtataccatttcatctcac |
454 |
Q |
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| T |
42555179 |
tggtgcaattattagcacgaaataccatttcatctcac |
42555216 |
T |
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