View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_high_5 (Length: 417)
Name: NF18215_high_5
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 208 - 402
Target Start/End: Original strand, 43091052 - 43091246
Alignment:
| Q |
208 |
aactccctaaatcaaagaaacagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
307 |
Q |
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| T |
43091052 |
aactccctaaatcaaagaaaaagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
43091151 |
T |
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| Q |
308 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
402 |
Q |
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| T |
43091152 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
43091246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 43090799 - 43090992
Alignment:
| Q |
19 |
atgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaaagatagatacttca-----gtgtcctaaaatatctgacacact |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43090799 |
atgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaaagatagatacttcagttcagtgtcctaaaatatctgacacact |
43090898 |
T |
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| Q |
114 |
cttgaatgcattcctagttaatcttcccttcccttatagttataacaaatatatcaacttcttcttctgctaaatttcttcaatgtgtgtgtat |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090899 |
cttgaatgcattcctagttaatcttcccatcccttatagttataacaaatatatcaacttcttcttctgctaaatttcttcaatgtgtgtgtat |
43090992 |
T |
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