View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18215_high_6 (Length: 364)

Name: NF18215_high_6
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18215_high_6
NF18215_high_6
[»] chr5 (4 HSPs)
chr5 (82-277)||(35625741-35625936)
chr5 (224-350)||(35629377-35629503)
chr5 (36-84)||(35626221-35626269)
chr5 (1-45)||(35625993-35626037)
[»] chr1 (3 HSPs)
chr1 (82-212)||(49145032-49145162)
chr1 (85-176)||(4235442-4235533)
chr1 (83-171)||(49149580-49149668)
[»] chr7 (4 HSPs)
chr7 (90-173)||(28614673-28614756)
chr7 (83-214)||(28621265-28621396)
chr7 (83-172)||(28612946-28613035)
chr7 (83-214)||(29269810-29269941)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 82 - 277
Target Start/End: Complemental strand, 35625936 - 35625741
Alignment:
Q  82 attcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagt 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35625936 attcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagt 35625837  T
Q  182 tcagaactcatgtactacccatgctaatgatcccaagcacaaaaagatgtttgtatagcatttcagccaagaaaatgtatccatttaaattgccaa 277  Q
    ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||| ||||||| |||||||||| ||||    
T  35625836 tcagaactcatgtactacccatgctaatgatcccaagaacaaacatatgtttgtatagcattccagccaagagaatgtatgcatttaaatttccaa 35625741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 224 - 350
Target Start/End: Complemental strand, 35629503 - 35629377
Alignment:
Q  224 aaagatgtttgtatagcatttcagccaagaaaatgtatccatttaaattgccaaattcttattaccttttttgttgtggatttagccatggttggcttgc 323  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  35629503 aaagatgtttgtatagcatttcagcgaagaaaatgtatccatttaaattgccaaatccttattaccatatttgttgtggatttagccatggttggcttgc 35629404  T
Q  324 aacaatggataaaagttatgccataac 350  Q
    |||||||||||||||||||||||||||    
T  35629403 aacaatggataaaagttatgccataac 35629377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 35626221 - 35626269
Alignment:
Q  36 taagattttgtgttatggcttattcaaccctagaaaccctacttatatt 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35626221 taagattttgtgttatggcttattcaaccctagaaaccctacttatatt 35626269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35625993 - 35626037
Alignment:
Q  1 taagaagaactaaagataagataaatctatgatgataagattttg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35625993 taagaagaactaaagataagataaatctatgatgataagattttg 35626037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 49145032 - 49145162
Alignment:
Q  82 attcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagt 181  Q
    ||||||||||||||||||||||  |||||| |||||| ||| ||||| ||||||||||  |||||||||||||||||||||| |||||||||||| || |    
T  49145032 attcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaat 49145131  T
Q  182 tcagaactcatgtactacccatgctaatgat 212  Q
    |||  ||  ||| ||||||||||||||||||    
T  49145132 tcaagaccaatgcactacccatgctaatgat 49145162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 4235442 - 4235533
Alignment:
Q  85 cttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatca 176  Q
    |||||||||||||||||||  ||| ||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||||||    
T  4235442 cttgacaagttagaagaacacatatatcatgtttggtttggtgctgtgtgcaagagttggcgatcaattgcaaagtttaaccatcaaaatca 4235533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 49149580 - 49149668
Alignment:
Q  83 ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaa 171  Q
    ||||||||| |||||||||||  ||||||||||||||||| ||||| ||||||||||  |||||||||||||||||| |||||||||||    
T  49149580 ttcttgacatgttagaagaacacatagatcatgtttggtttggtgctgtgtgcaagagttggcgatcaattgcaaagcttaaccatcaa 49149668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 28614673 - 28614756
Alignment:
Q  90 caagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaa 173  Q
    ||||||||||||||  |||||||||||| ||||| ||| |||||||||||  ||||||||| |||||||| |||||||||||||    
T  28614673 caagttagaagaacacatagatcatgttaggttcagtgtcgtgtgcaagacttggcgatcagttgcaaagcttaaccatcaaaa 28614756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 28621265 - 28621396
Alignment:
Q  83 ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagtt 182  Q
    |||||||||| || |||||||  || ||||||||| |||| |||| ||||||||| || ||||| ||| |||||||||| |||||||||||||| || ||    
T  28621265 ttcttgacaaattggaagaacacatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccatcaaaatcatcaatt 28621364  T
Q  183 cagaactcatgtactacccatgctaatgatcc 214  Q
     || | | || ||| ||||||||| |||||||    
T  28621365 tagcattaatataccacccatgctcatgatcc 28621396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 28613035 - 28612946
Alignment:
Q  83 ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaa 172  Q
    ||||||||||||| |||||||  |||||||||||| |||| | || |||||||||||  |||| |||| |||||||| ||||||||||||    
T  28613035 ttcttgacaagttggaagaacacatagatcatgttaggtttgctgtcgtgtgcaagacttggctatcagttgcaaagcttaaccatcaaa 28612946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 29269810 - 29269941
Alignment:
Q  83 ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagtt 182  Q
    |||||||| |||| |||||||  |||||||||||| |||| ||||  ||||||||||  || | ||||||||||||| |||||||| ||||||| || ||    
T  29269810 ttcttgacgagttggaagaacacatagatcatgttaggtttggtgtggtgtgcaagagttgcctatcaattgcaaagcttaaccataaaaatcatcaatt 29269909  T
Q  183 cagaactcatgtactacccatgctaatgatcc 214  Q
     || | | |||||| ||| ||| |||||||||    
T  29269910 taggattgatgtaccacctatgttaatgatcc 29269941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University