View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_high_9 (Length: 334)
Name: NF18215_high_9
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 22042728 - 22042541
Alignment:
| Q |
8 |
attatactcattttggttataacgataccatctcagccatattcttgatctcttccctttaagtaatgctctccaagagttctagtaagctaggagtatg |
107 |
Q |
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| T |
22042728 |
attatactcatttcggttataacgataccatctcagccatattcttgatctcttccctttaagtaatgctctccaagagttctagtaagctaggagcatg |
22042629 |
T |
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| Q |
108 |
aacacaaacacttgtttagtgtttttgaagacataaatacattaccagatggcaagacatcattcagtatcaaacatttcaacatcag |
195 |
Q |
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| T |
22042628 |
aacacaaacacttctttagtgtttttgaagatataaatacattagcagatggcaagacatcattcagaatcaaacatttcaacatcag |
22042541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 194 - 320
Target Start/End: Complemental strand, 22042126 - 22042000
Alignment:
| Q |
194 |
agtagaattgaaaacgagactggtgcgtcaatttttggcaccgtgaacaaattcacaatgatatcacgtgttttctgttttgacaggttcatacatacaa |
293 |
Q |
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|||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||| ||||||||||||||||||||||| |
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| T |
22042126 |
agtaaaattgtaaatgagactggtgcgtcaatttttggcaccgtgaacaatttcacaacgataccctgtgttttctattttgacaggttcatacatacaa |
22042027 |
T |
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| Q |
294 |
caatatcctggaggaatcaaattaatg |
320 |
Q |
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| T |
22042026 |
caatatcctggaggaatcaaattaatg |
22042000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 22016482 - 22016574
Alignment:
| Q |
103 |
gtatgaacacaaacacttgtttagtgtttttgaagacataaatacattaccagatggcaagacatcattcagtatcaaacatttcaacatcag |
195 |
Q |
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| T |
22016482 |
gtatgaacacaaatgcttctttagtgtttttgaagatataaatttattagtagatgccaagacatcattctgaagcaaccatttcaacatcag |
22016574 |
T |
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