View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_low_12 (Length: 310)
Name: NF18215_low_12
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_low_12 |
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| [»] scaffold0561 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 132 - 302
Target Start/End: Complemental strand, 22633527 - 22633362
Alignment:
| Q |
132 |
caattccaatgatgttaaaataaaagtagagaaaatacacataagactctacnnnnnnnnnnncatctaagttgatccttaaatctaaactggcatgaca |
231 |
Q |
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| T |
22633527 |
caattccaatgatggtaaaataaaagtagagaaaatacatagaacacactacaaaaaaaaaa-catctaaattgatccttaaatctaaactggcatgaca |
22633429 |
T |
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| Q |
232 |
gggtataaaatcccaccaatggcatcaagcctgactgactgccaaactgctacacctccaaagcctttgct |
302 |
Q |
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| T |
22633428 |
aggtataaaatcccaccaatggcatcaagcctg----actgccaaactgctacacctccaaagcctttgct |
22633362 |
T |
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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 22649330 - 22649241
Alignment:
| Q |
1 |
tttcccatcttacgatctgaatcaataccatatattttttaaaccaattctaggcaatgagctttcaataccgaataatacactacaaaga |
91 |
Q |
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| T |
22649330 |
tttcccatattacgatctgaatcaatgccatat-ttttttaaaccaaatctaggcaatgagctttcaataccgaataatacactacaaaga |
22649241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 22649052 - 22648996
Alignment:
| Q |
80 |
acactacaaagacataaaatagtgtatgaatattcctttctcatggtaatatcaatt |
136 |
Q |
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| T |
22649052 |
acactgcaaagacataaaatagtgtatgaatattcctttctaatggtagtatcaatt |
22648996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0561 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0561
Description:
Target: scaffold0561; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 1363 - 1431
Alignment:
| Q |
195 |
catctaagttgatccttaaatctaaactggcatgacagggtataaaatcccaccaatggcatcaagcct |
263 |
Q |
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| T |
1363 |
catctaagttgatccttaactctaaactggtatgacagggtacaagaacccaccgatggcatcaagcct |
1431 |
T |
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