View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_low_14 (Length: 306)
Name: NF18215_low_14
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 55162444 - 55162724
Alignment:
| Q |
16 |
atgaaggcagagtcaactacacaatttcagatcaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaatatattctgggaagaccc |
115 |
Q |
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| T |
55162444 |
atgaaggcagcgtcaactacacaatttcagaccaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaatatattctgggaagaccc |
55162543 |
T |
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| Q |
116 |
taaatacaatcctgcatgggttcttaaccttacaggtacacagttaagatctgctgtgaattcacgaattcaaagtctcatgaaccaatacaaaacagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162544 |
taaatacaatcctgcatgggttcttaaccttacaggtacacagttaagatctgctgtgaattcacgaattcaaagtctcatgaaccaatacaaaacagaa |
55162643 |
T |
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| Q |
216 |
ttcatacattgggatatcagtaacgaaatgcttcattttgatttctacgaacaaaggcttggacccaatgctacatttcat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162644 |
ttcatacattgggatatcagtaacgaaatgcttcattttgatttctacgaacaaaggcttggacccaatgctacatttcat |
55162724 |
T |
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