View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_low_17 (Length: 268)
Name: NF18215_low_17
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 114 - 253
Target Start/End: Complemental strand, 6922599 - 6922460
Alignment:
| Q |
114 |
cacgatgtgatatgagcatgaatggaattgtatatgactgtgaattttttatgaataggctttgaagggtgtgagagagaaggttgaattggctactaag |
213 |
Q |
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| T |
6922599 |
cacgatgtgatatgagcatgaatggaattgtatatgactgtgaattttttatgaataggctttgaagggtgtgagagagaaggttgaattggctactaag |
6922500 |
T |
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| Q |
214 |
tttggagtcagagctggtgatggaaaatttgagatctgtg |
253 |
Q |
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| T |
6922499 |
tttggagtcagagctggtgatggaaaatttgagatctgtg |
6922460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 114 - 253
Target Start/End: Original strand, 6955613 - 6955752
Alignment:
| Q |
114 |
cacgatgtgatatgagcatgaatggaattgtatatgactgtgaattttttatgaataggctttgaagggtgtgagagagaaggttgaattggctactaag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6955613 |
cacgatgtgatatgagcatgaatggaattgtatatgactgtgaattttttatgaataggctttgaagggtgtgagagagaaggttgaattggctactaag |
6955712 |
T |
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| Q |
214 |
tttggagtcagagctggtgatggaaaatttgagatctgtg |
253 |
Q |
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| T |
6955713 |
tttggagtcagagctggtgatggaaaatttgagatctgtg |
6955752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 6918368 - 6918281
Alignment:
| Q |
166 |
gaataggctttgaagggtgtgagagagaaggttgaattggctactaagtttggagtcagagctggtgatggaaaatttgagatctgtg |
253 |
Q |
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| T |
6918368 |
gaataggctttgaaggtagttagagagaaagttgaattggctacaaaatttggagtcagagctggtgatggaaaagttgagatctgtg |
6918281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 6918145 - 6918176
Alignment:
| Q |
1 |
accaatgaagttcttcttggaaaggttaccac |
32 |
Q |
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| T |
6918145 |
accaatgaagttcttcttggaaaggttaccac |
6918176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6918529 - 6918498
Alignment:
| Q |
1 |
accaatgaagttcttcttggaaaggttaccac |
32 |
Q |
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| T |
6918529 |
accaatgaagttcttcttggaaaggttaccac |
6918498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6922712 - 6922681
Alignment:
| Q |
1 |
accaatgaagttcttcttggaaaggttaccac |
32 |
Q |
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| T |
6922712 |
accaatgaagttcttcttggaaaggttaccac |
6922681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 6923618 - 6923649
Alignment:
| Q |
1 |
accaatgaagttcttcttggaaaggttaccac |
32 |
Q |
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|
| T |
6923618 |
accaatgaagttcttcttggaaaggttaccac |
6923649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 6955500 - 6955531
Alignment:
| Q |
1 |
accaatgaagttcttcttggaaaggttaccac |
32 |
Q |
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| T |
6955500 |
accaatgaagttcttcttggaaaggttaccac |
6955531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 6969783 - 6969750
Alignment:
| Q |
187 |
agagagaaggttgaattggctactaagtttggag |
220 |
Q |
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| T |
6969783 |
agagagaaggttgaattggctacaaagtttggag |
6969750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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