View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18215_low_18 (Length: 259)

Name: NF18215_low_18
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18215_low_18
NF18215_low_18
[»] chr7 (2 HSPs)
chr7 (69-128)||(36462369-36462428)
chr7 (223-259)||(10095745-10095781)
[»] chr3 (4 HSPs)
chr3 (228-259)||(37331630-37331661)
chr3 (223-259)||(47342608-47342644)
chr3 (223-259)||(48191741-48191777)
chr3 (223-259)||(52866443-52866479)
[»] chr6 (3 HSPs)
chr6 (229-259)||(13463010-13463040)
chr6 (229-257)||(16199152-16199180)
chr6 (223-259)||(26527268-26527304)
[»] chr5 (2 HSPs)
chr5 (229-259)||(25792924-25792954)
chr5 (229-259)||(33075143-33075173)
[»] chr1 (1 HSPs)
chr1 (229-259)||(48083536-48083566)
[»] chr8 (2 HSPs)
chr8 (226-259)||(29309496-29309529)
chr8 (226-258)||(15754464-15754496)
[»] chr4 (1 HSPs)
chr4 (226-259)||(52164564-52164597)
[»] chr2 (3 HSPs)
chr2 (229-258)||(26003467-26003496)
chr2 (223-259)||(11726573-11726609)
chr2 (223-259)||(15119803-15119839)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 36462428 - 36462369
Alignment:
Q  69 tccataactatctttttgacaagtgattttgaaatatgctagctctactgagtataattc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36462428 tccataactatctttttgacaagtgattttgaaatatgctagctctactgagtataattc 36462369  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 10095745 - 10095781
Alignment:
Q  223 ttaaccttttaggttcattcattaaatgatgtatgtg 259  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  10095745 ttaacattttagattcattcattaaatgatgtatgtg 10095781  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 259
Target Start/End: Original strand, 37331630 - 37331661
Alignment:
Q  228 cttttaggttcattcattaaatgatgtatgtg 259  Q
    ||||||||||||||||||||||||||||||||    
T  37331630 cttttaggttcattcattaaatgatgtatgtg 37331661  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 47342608 - 47342644
Alignment:
Q  223 ttaaccttttaggttcattcattaaatgatgtatgtg 259  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  47342608 ttaactttttaggttcattcatttaatgatgtatgtg 47342644  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 48191741 - 48191777
Alignment:
Q  223 ttaaccttttaggttcattcattaaatgatgtatgtg 259  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  48191741 ttaacattttagattcattcattaaatgatgtatgtg 48191777  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 52866443 - 52866479
Alignment:
Q  223 ttaaccttttaggttcattcattaaatgatgtatgtg 259  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  52866443 ttaacattttagattcattcattaaatgatgtatgtg 52866479  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 259
Target Start/End: Complemental strand, 13463040 - 13463010
Alignment:
Q  229 ttttaggttcattcattaaatgatgtatgtg 259  Q
    |||||||||||||||||||||||||||||||    
T  13463040 ttttaggttcattcattaaatgatgtatgtg 13463010  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 16199152 - 16199180
Alignment:
Q  229 ttttaggttcattcattaaatgatgtatg 257  Q
    |||||||||||||||||||||||||||||    
T  16199152 ttttaggttcattcattaaatgatgtatg 16199180  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 26527304 - 26527268
Alignment:
Q  223 ttaaccttttaggttcattcattaaatgatgtatgtg 259  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  26527304 ttaacattttagattcattcattaaatgatgtatgtg 26527268  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 259
Target Start/End: Complemental strand, 25792954 - 25792924
Alignment:
Q  229 ttttaggttcattcattaaatgatgtatgtg 259  Q
    |||||||||||||||||||||||||||||||    
T  25792954 ttttaggttcattcattaaatgatgtatgtg 25792924  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 259
Target Start/End: Complemental strand, 33075173 - 33075143
Alignment:
Q  229 ttttaggttcattcattaaatgatgtatgtg 259  Q
    |||||||||||||||||||||||||||||||    
T  33075173 ttttaggttcattcattaaatgatgtatgtg 33075143  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 259
Target Start/End: Original strand, 48083536 - 48083566
Alignment:
Q  229 ttttaggttcattcattaaatgatgtatgtg 259  Q
    |||||||||||||||||||||||||||||||    
T  48083536 ttttaggttcattcattaaatgatgtatgtg 48083566  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 29309496 - 29309529
Alignment:
Q  226 accttttaggttcattcattaaatgatgtatgtg 259  Q
    |||||||||||||||||||||||||||| |||||    
T  29309496 accttttaggttcattcattaaatgatgcatgtg 29309529  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 15754464 - 15754496
Alignment:
Q  226 accttttaggttcattcattaaatgatgtatgt 258  Q
    |||||||||||||||||||| ||||||||||||    
T  15754464 accttttaggttcattcatttaatgatgtatgt 15754496  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 52164564 - 52164597
Alignment:
Q  226 accttttaggttcattcattaaatgatgtatgtg 259  Q
    |||||||||||||||||||| |||||||||||||    
T  52164564 accttttaggttcattcatttaatgatgtatgtg 52164597  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 258
Target Start/End: Original strand, 26003467 - 26003496
Alignment:
Q  229 ttttaggttcattcattaaatgatgtatgt 258  Q
    ||||||||||||||||||||||||||||||    
T  26003467 ttttaggttcattcattaaatgatgtatgt 26003496  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 11726609 - 11726573
Alignment:
Q  223 ttaaccttttaggttcattcattaaatgatgtatgtg 259  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  11726609 ttaacattttagattcattcattaaatgatgtatgtg 11726573  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 15119803 - 15119839
Alignment:
Q  223 ttaaccttttaggttcattcattaaatgatgtatgtg 259  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  15119803 ttaacattttagattcattcattaaatgatgtatgtg 15119839  T

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