View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_low_3 (Length: 500)
Name: NF18215_low_3
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 29 - 495
Target Start/End: Complemental strand, 34905288 - 34904823
Alignment:
| Q |
29 |
agtatgaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacctaaagattacatgacaactgagat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34905288 |
agtatgaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacctaaagattacatgacaactgagat |
34905189 |
T |
|
| Q |
129 |
ttgtattatctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgtttttatattattagattttgcagttttctaattctaa |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34905188 |
ttgtat-atctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgtttttatattattagattttgcagttttctaattctaa |
34905090 |
T |
|
| Q |
229 |
ctgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttgg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34905089 |
ctgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctaatcctactcaaacaagtccatttgg |
34904990 |
T |
|
| Q |
329 |
aagtgccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagtattcggaagcagcatatttacaccttttggcgcttcatcc |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
34904989 |
aagtgccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagtatttggaagcagcatattaacaccttttggcgcttcatcc |
34904890 |
T |
|
| Q |
429 |
cagccagcatttggttcgacatgcactcctgcatttggtgctactagcacccctgcgtctgcctttg |
495 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34904889 |
cagccagaatttggttcgacatgcactcctgcatttggtgctactagcacccctgcgtctgcctttg |
34904823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 133 - 407
Target Start/End: Complemental strand, 34896461 - 34896187
Alignment:
| Q |
133 |
attatctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgtttttatattattagattttgcagttttctaattctaactga |
232 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34896461 |
attatctaataatggtaatcattagcatcttttggcttacttttctgcctttttattgtttttatattattagattttgcagttttctaattctaactga |
34896362 |
T |
|
| Q |
233 |
gaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagt |
332 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34896361 |
gatccaacttttctcctttataggatcatcagtgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagt |
34896262 |
T |
|
| Q |
333 |
gccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagtattcggaagcagcatattt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
34896261 |
gccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagcatttggaagcagcatattt |
34896187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 138 - 368
Target Start/End: Original strand, 28545552 - 28545778
Alignment:
| Q |
138 |
ctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgtttttatattattagattttgcagttttctaattctaactgagaacc |
237 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| | ||||||||||| || || | ||||||| |||||| ||||||||||||||| || | |||| |
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| T |
28545552 |
ctaataatggtaaatattagcatcttttggcttacgtttctgccttttttttattgt---attattatattttgtagttttctaattctatctta-aacc |
28545647 |
T |
|
| Q |
238 |
aacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagtgccac |
337 |
Q |
| |
|
|| ||| | | | |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
28545648 |
aagtttgttccctcccaggatcatcactctttggtcaggagcctgcttttgtaggttttggctctactcctactcaaacaagtccatgtagaagtgccat |
28545747 |
T |
|
| Q |
338 |
ccaaccatcacaaccagcatttggaagtaac |
368 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
28545748 |
ccaaccatcacgaccagcatttggaagtaac |
28545778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 34896593 - 34896486
Alignment:
| Q |
29 |
agtatgaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacctaaagattacatgacaactgagat |
128 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
34896593 |
agtacgaaagaatgtgatttctttcagctatatgcattctctattcaattttagtttacatttctttttgaagacctaaagattacgtaacaactgagat |
34896494 |
T |
|
| Q |
129 |
ttgtatta |
136 |
Q |
| |
|
|||||||| |
|
|
| T |
34896493 |
ttgtatta |
34896486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 135 - 329
Target Start/End: Complemental strand, 34910251 - 34910064
Alignment:
| Q |
135 |
tatctaataatggtaatcattggcatcttttggcttacttatctgcct-ttttattgtttttatattattagattttgcagttttctaattctaactgag |
233 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||| ||||| |
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|
| T |
34910251 |
tatctaataatggtattcattagcatcttttggcttacttttctgccttttttattg--------ttattatattttgcagttttctaattctatctgag |
34910160 |
T |
|
| Q |
234 |
aaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttgga |
329 |
Q |
| |
|
|||||||| | | ||| |||||| ||| ||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||| |||||| |
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|
| T |
34910159 |
aaccaactctcttccttcccaggatcgtcattctttggtcaggtgcctgcttttggaggttttggctatacacctactcaaataagtccttttgga |
34910064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 135 - 369
Target Start/End: Original strand, 28543315 - 28543544
Alignment:
| Q |
135 |
tatctaataatggtaatcattggcatcttttggcttacttatctgccttttt-attgtttttatattattagattttgcagttttctaattctaactgag |
233 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| || ||| ||||||| |||||| ||||||| ||||||| |||||||||||||| ||| |
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|
| T |
28543315 |
tatctaataatggtaatcattagcatcttttggcttagttttctcccttttttattgtt-----attattatattttgc-gttttctaattctatttgaa |
28543408 |
T |
|
| Q |
234 |
aaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagtg |
333 |
Q |
| |
|
|||| ||| | | ||| |||||||||| | ||| | ||| ||||| ||||||||||||||||||| | |||||||| | |||||| |||||| ||| |
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|
| T |
28543409 |
aaccgactctcttccttcccaggatcatcatccttttgccaggagccttcttttggaggttttggctcgatgcctactcagataagtccttttggatgtg |
28543508 |
T |
|
| Q |
334 |
ccacccaaccatcacaaccagcatttggaagtaaca |
369 |
Q |
| |
|
||| |||||||||||||||| ||||||||| |||| |
|
|
| T |
28543509 |
ccatacaaccatcacaaccagtatttggaagcaaca |
28543544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 34910386 - 34910281
Alignment:
| Q |
31 |
tatgaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacctaaagattacatgacaactgagattt |
130 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||| || || |||||||| |||||| | |||||||||||||||||| || ||| |||||| |
|
|
| T |
34910386 |
tatgaaggaatgtgatttctttcagttatatgtgttctctagtcgatgctaatttacggttctttgtaaagacctaaagattacataacgactaagattt |
34910287 |
T |
|
| Q |
131 |
gtatta |
136 |
Q |
| |
|
|||||| |
|
|
| T |
34910286 |
gtatta |
34910281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 484
Target Start/End: Complemental strand, 34896174 - 34896122
Alignment:
| Q |
432 |
ccagcatttggttcgacatgcactcctgcatttggtgctactagcacccctgc |
484 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
34896174 |
ccagcatttggttcgacaggaactcctgcatttggtgctacgagcacccctgc |
34896122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 472
Target Start/End: Complemental strand, 34916019 - 34915983
Alignment:
| Q |
436 |
catttggttcgacatgcactcctgcatttggtgctac |
472 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34916019 |
catttggttcgacaggcactcctgcatttggtgctac |
34915983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 28543202 - 28543232
Alignment:
| Q |
31 |
tatgaaggaatgtgatttctttcagctatat |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
28543202 |
tatgaaggaatgtgatttctttcagctatat |
28543232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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