View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18215_low_7 (Length: 364)
Name: NF18215_low_7
Description: NF18215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18215_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 35626017 - 35625741
Alignment:
| Q |
1 |
tttatcttatctttagttcttcttatattcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaag |
100 |
Q |
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| T |
35626017 |
tttatcttatctttagttcttcttatattcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaag |
35625918 |
T |
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| Q |
101 |
aacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagttcagaactcatgtactacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35625917 |
aacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagttcagaactcatgtactacc |
35625818 |
T |
|
| Q |
201 |
catgctaatgatcccaagcacaaaaagatgtttgtatagcatttcagccaagaaaatgtatccatttaaattgccaa |
277 |
Q |
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|||||||||||||||||| ||||| | |||||||||||||||| ||||||||| ||||||| |||||||||| |||| |
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| T |
35625817 |
catgctaatgatcccaagaacaaacatatgtttgtatagcattccagccaagagaatgtatgcatttaaatttccaa |
35625741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 224 - 350
Target Start/End: Complemental strand, 35629503 - 35629377
Alignment:
| Q |
224 |
aaagatgtttgtatagcatttcagccaagaaaatgtatccatttaaattgccaaattcttattaccttttttgttgtggatttagccatggttggcttgc |
323 |
Q |
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| T |
35629503 |
aaagatgtttgtatagcatttcagcgaagaaaatgtatccatttaaattgccaaatccttattaccatatttgttgtggatttagccatggttggcttgc |
35629404 |
T |
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| Q |
324 |
aacaatggataaaagttatgccataac |
350 |
Q |
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| T |
35629403 |
aacaatggataaaagttatgccataac |
35629377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 4235404 - 4235533
Alignment:
| Q |
47 |
attgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcg |
146 |
Q |
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|||||| |||||||||||||||| | || |||| || ||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||| ||||| |
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| T |
4235404 |
attgggcaaatttagaagcacttcctcttagtttgatacttgacaagttagaagaacacatatatcatgtttggtttggtgctgtgtgcaagagttggcg |
4235503 |
T |
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| Q |
147 |
atcaattgcaaagtttaaccatcaaaatca |
176 |
Q |
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| T |
4235504 |
atcaattgcaaagtttaaccatcaaaatca |
4235533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 49144997 - 49145162
Alignment:
| Q |
47 |
attgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcg |
146 |
Q |
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|||||| |||||||||||| ||||| || ||| |||||||||||||||||||||| |||||| |||||| ||| ||||| |||||||||| ||||| |
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| T |
49144997 |
attgggcaaatttagaagcccttgctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcg |
49145096 |
T |
|
| Q |
147 |
atcaattgcaaagtttaaccatcaaaatcagcagttcagaactcatgtactacccatgctaatgat |
212 |
Q |
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| T |
49145097 |
atcaattgcaaagtttagccatcaaaatcatcaattcaagaccaatgcactacccatgctaatgat |
49145162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 49149524 - 49149668
Alignment:
| Q |
27 |
attcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggt |
126 |
Q |
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|||||||| |||||| |||||||| |||||||| |||| || | || ||||| ||||||||| ||||||||||| ||||||||||||||||| ||| |
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| T |
49149524 |
attcaacacaatggagagagattgggtaaatttaggagcaattcctcttggtttggttcttgacatgttagaagaacacatagatcatgtttggtttggt |
49149623 |
T |
|
| Q |
127 |
gccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaa |
171 |
Q |
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| T |
49149624 |
gctgtgtgcaagagttggcgatcaattgcaaagcttaaccatcaa |
49149668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 28614673 - 28614756
Alignment:
| Q |
90 |
caagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaa |
173 |
Q |
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|||||||||||||| |||||||||||| ||||| ||| ||||||||||| ||||||||| |||||||| ||||||||||||| |
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| T |
28614673 |
caagttagaagaacacatagatcatgttaggttcagtgtcgtgtgcaagacttggcgatcagttgcaaagcttaaccatcaaaa |
28614756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 28621265 - 28621396
Alignment:
| Q |
83 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagtt |
182 |
Q |
| |
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|||||||||| || ||||||| || ||||||||| |||| |||| ||||||||| || ||||| ||| |||||||||| |||||||||||||| || || |
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| T |
28621265 |
ttcttgacaaattggaagaacacatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccatcaaaatcatcaatt |
28621364 |
T |
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| Q |
183 |
cagaactcatgtactacccatgctaatgatcc |
214 |
Q |
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|| | | || ||| ||||||||| ||||||| |
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| T |
28621365 |
tagcattaatataccacccatgctcatgatcc |
28621396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 28613035 - 28612946
Alignment:
| Q |
83 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaa |
172 |
Q |
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||||||||||||| ||||||| |||||||||||| |||| | || ||||||||||| |||| |||| |||||||| |||||||||||| |
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| T |
28613035 |
ttcttgacaagttggaagaacacatagatcatgttaggtttgctgtcgtgtgcaagacttggctatcagttgcaaagcttaaccatcaaa |
28612946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 29269810 - 29269941
Alignment:
| Q |
83 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagtt |
182 |
Q |
| |
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|||||||| |||| ||||||| |||||||||||| |||| |||| |||||||||| || | ||||||||||||| |||||||| ||||||| || || |
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| T |
29269810 |
ttcttgacgagttggaagaacacatagatcatgttaggtttggtgtggtgtgcaagagttgcctatcaattgcaaagcttaaccataaaaatcatcaatt |
29269909 |
T |
|
| Q |
183 |
cagaactcatgtactacccatgctaatgatcc |
214 |
Q |
| |
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|| | | |||||| ||| ||| ||||||||| |
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| T |
29269910 |
taggattgatgtaccacctatgttaatgatcc |
29269941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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