View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18216_high_10 (Length: 307)

Name: NF18216_high_10
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18216_high_10
NF18216_high_10
[»] chr5 (3 HSPs)
chr5 (95-287)||(41983940-41984133)
chr5 (46-87)||(372613-372654)
chr5 (47-87)||(17489486-17489526)
[»] chr4 (8 HSPs)
chr4 (43-87)||(20632541-20632585)
chr4 (47-87)||(2193702-2193742)
chr4 (46-88)||(8681078-8681120)
chr4 (46-87)||(15638267-15638308)
chr4 (46-87)||(18568708-18568749)
chr4 (47-87)||(20056520-20056560)
chr4 (47-87)||(32901467-32901507)
chr4 (46-86)||(33484000-33484040)
[»] chr8 (5 HSPs)
chr8 (42-87)||(30129542-30129587)
chr8 (46-87)||(37562034-37562075)
chr8 (42-87)||(11139029-11139074)
chr8 (42-86)||(11089710-11089754)
chr8 (42-86)||(38504303-38504347)
[»] chr6 (3 HSPs)
chr6 (42-87)||(24038314-24038359)
chr6 (46-87)||(1804006-1804047)
chr6 (46-83)||(6435173-6435210)
[»] chr3 (12 HSPs)
chr3 (46-87)||(12044647-12044688)
chr3 (46-86)||(47056419-47056459)
chr3 (42-87)||(1208078-1208123)
chr3 (46-87)||(23906880-23906921)
chr3 (46-87)||(43441807-43441848)
chr3 (42-87)||(50652521-50652566)
chr3 (46-87)||(51717578-51717619)
chr3 (46-87)||(53932284-53932325)
chr3 (46-87)||(54233394-54233435)
chr3 (46-86)||(27937101-27937141)
chr3 (42-86)||(40478181-40478225)
chr3 (42-86)||(46626696-46626740)
[»] chr1 (4 HSPs)
chr1 (43-87)||(46902737-46902781)
chr1 (46-86)||(50777317-50777357)
chr1 (46-87)||(42843237-42843278)
chr1 (42-86)||(5383892-5383936)
[»] scaffold0019 (1 HSPs)
scaffold0019 (46-83)||(72498-72535)
[»] chr7 (5 HSPs)
chr7 (46-87)||(1838352-1838393)
chr7 (46-87)||(8742520-8742561)
chr7 (42-87)||(10014848-10014893)
chr7 (46-87)||(37385126-37385167)
chr7 (46-86)||(25614715-25614755)
[»] chr2 (3 HSPs)
chr2 (54-87)||(5954390-5954423)
chr2 (46-87)||(12358450-12358491)
chr2 (42-86)||(30413626-30413670)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 95 - 287
Target Start/End: Complemental strand, 41984133 - 41983940
Alignment:
Q  95 gtagtttgatcgagaaataaggaaaattcgactaataattattttatttatcaattgaatttattttctcctcaacaatttatattcatcccctaaa-aa 193  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41984133 gtagtttgatcgagaaataaggaaaatccgactaataattattttatttatcaattgaatttattttctcctcaacaatttatattcatcccctaaaaaa 41984034  T
Q  194 aacaatttatattcattaacaatttaagtacaaaattctcnnnnnnnnnnnttctcgtgcgttctagacactatgcgacaataaattaataaac 287  Q
    ||||||||||||||||||||||||||||||||||||||||           ||||||| | |||| ||||||||||||||||||||||||||||    
T  41984033 aacaatttatattcattaacaatttaagtacaaaattctcaaaaaaaataattctcgtacattctggacactatgcgacaataaattaataaac 41983940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 372654 - 372613
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| ||||||| | ||||||||||||||||||||||||    
T  372654 gttgtcaccaaaattatcatcaattggatgtacaaatatcac 372613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 17489486 - 17489526
Alignment:
Q  47 ttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    |||||| |||| |||| ||||||||||||||||||||||||    
T  17489486 ttgtcaccaaagttgtcatcaattggatgtacaaatatcac 17489526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 20632585 - 20632541
Alignment:
Q  43 aaagttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  20632585 aaagttgtcaccaaaattgtcatcaattggatgtacaaatatcac 20632541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 2193742 - 2193702
Alignment:
Q  47 ttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  2193742 ttgtcatcaaagttgtcatcaattggatgtacaaatatcac 2193702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 8681078 - 8681120
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcaca 88  Q
    ||||||| |||| |||| |||||||||||||||||||||||||    
T  8681078 gttgtcaccaaagttgtcatcaattggatgtacaaatatcaca 8681120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 15638267 - 15638308
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  15638267 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 15638308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 18568749 - 18568708
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  18568749 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 18568708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 20056520 - 20056560
Alignment:
Q  47 ttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    |||||| |||| |||| ||||||||||||||||||||||||    
T  20056520 ttgtcaccaaagttgtcatcaattggatgtacaaatatcac 20056560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 32901467 - 32901507
Alignment:
Q  47 ttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  32901467 ttgtcaccaaaattatcatcaattggatgtacaaatatcac 32901507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 33484040 - 33484000
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    ||||||| |||| |||| |||||||||||||||||||||||    
T  33484040 gttgtcaccaaagttgtcatcaattggatgtacaaatatca 33484000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 30129542 - 30129587
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||||    
T  30129542 caaagttgtcaccaaagttgtcatcaattggatgtacaaatatcac 30129587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 37562075 - 37562034
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  37562075 gttgtcatcaaagttgtcatcaattggatgtacaaatatcac 37562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 11139029 - 11139074
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||||||| |||| |||| ||||||| ||||||||||||||||    
T  11139029 caaagttgtcaccaaagttgtcatcaatttgatgtacaaatatcac 11139074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 11089710 - 11089754
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    ||||||||||| ||||||||| || || |||||||||||||||||    
T  11089710 caaagttgtcaccaaaattgtcattaaatggatgtacaaatatca 11089754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 38504303 - 38504347
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    |||| |||||| |||||||||||| || |||||||||||||||||    
T  38504303 caaaattgtcaccaaaattgtaattaaatggatgtacaaatatca 38504347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 24038314 - 24038359
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  24038314 caaagttgtcaccaaaattgtcatcaattagatgtacaaatatcac 24038359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 1804006 - 1804047
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  1804006 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 1804047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 6435173 - 6435210
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaata 83  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  6435173 gttgtcaccaaaattgtcatcaattggatgtacaaata 6435210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 12044688 - 12044647
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  12044688 gttgtcatcaaagttgtcatcaattggatgtacaaatatcac 12044647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 47056459 - 47056419
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  47056459 gttgtcatcaaaattgtcatcaactggatgtacaaatatca 47056419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 1208078 - 1208123
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||||||| |||| |||  ||||||||||||||||||||||||    
T  1208078 caaagttgtcaccaaagttgacatcaattggatgtacaaatatcac 1208123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 23906921 - 23906880
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  23906921 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 23906880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 43441807 - 43441848
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    |||||| ||||| |||| ||||||||||||||||||||||||    
T  43441807 gttgtcgtcaaagttgtcatcaattggatgtacaaatatcac 43441848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 50652521 - 50652566
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    |||| |||||||||||||||| |||||||  |||||||||||||||    
T  50652521 caaaattgtcatcaaaattgtcatcaattaaatgtacaaatatcac 50652566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 51717578 - 51717619
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  51717578 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 51717619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 53932325 - 53932284
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  53932325 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 53932284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 54233435 - 54233394
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  54233435 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 54233394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 27937101 - 27937141
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    |||||||||||| |||| ||||||| |||||||||||||||    
T  27937101 gttgtcatcaaagttgtcatcaattagatgtacaaatatca 27937141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 40478225 - 40478181
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    ||||||||||| ||||||||| || || |||||||||||||||||    
T  40478225 caaagttgtcaccaaaattgtcattaaatggatgtacaaatatca 40478181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 46626696 - 46626740
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    ||||||||||| |||| |||| ||||||| |||||||||||||||    
T  46626696 caaagttgtcaccaaagttgtcatcaattagatgtacaaatatca 46626740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 46902737 - 46902781
Alignment:
Q  43 aaagttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||    
T  46902737 aaagttgtcactaaaattgtcatcaattggatgtacaaatatcac 46902781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 50777357 - 50777317
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  50777357 gttgtcaccaaaattgtcatcaattggatgtacaaatatca 50777317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 42843278 - 42843237
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| ||||||| | ||||||||||||||||||||||||    
T  42843278 gttgtcaccaaaattatcatcaattggatgtacaaatatcac 42843237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 5383892 - 5383936
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    ||||||||||| |||| ||||||| || |||||||||||||||||    
T  5383892 caaagttgtcaccaaagttgtaattaaatggatgtacaaatatca 5383936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 72498 - 72535
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaata 83  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  72498 gttgtcatccaaattgtcatcaattggatgtacaaata 72535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 1838393 - 1838352
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  1838393 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 1838352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 8742520 - 8742561
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  8742520 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 8742561  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 10014893 - 10014848
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    |||| |||||| |||| |||| ||||||||||||||||||||||||    
T  10014893 caaaattgtcaccaaagttgtcatcaattggatgtacaaatatcac 10014848  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 37385167 - 37385126
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  37385167 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 37385126  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 25614755 - 25614715
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    ||||||| ||||||||| ||||||| |||||||||||||||    
T  25614755 gttgtcaccaaaattgtcatcaattagatgtacaaatatca 25614715  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 5954423 - 5954390
Alignment:
Q  54 caaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||||| ||||||||||||||||||||||||    
T  5954423 caaaattgtcatcaattggatgtacaaatatcac 5954390  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 12358450 - 12358491
Alignment:
Q  46 gttgtcatcaaaattgtaatcaattggatgtacaaatatcac 87  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  12358450 gttgtcaccaaagttgtcatcaattggatgtacaaatatcac 12358491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 30413670 - 30413626
Alignment:
Q  42 caaagttgtcatcaaaattgtaatcaattggatgtacaaatatca 86  Q
    ||||||||||| ||||||||| || || |||||||||||||||||    
T  30413670 caaagttgtcaccaaaattgtcattaaatggatgtacaaatatca 30413626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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