View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18216_high_12 (Length: 281)

Name: NF18216_high_12
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18216_high_12
NF18216_high_12
[»] chr6 (40 HSPs)
chr6 (17-219)||(27674823-27675025)
chr6 (15-221)||(26805211-26805417)
chr6 (15-267)||(27695838-27696090)
chr6 (33-144)||(31287366-31287477)
chr6 (15-144)||(27590373-27590502)
chr6 (28-267)||(25547641-25547883)
chr6 (19-263)||(27715751-27715995)
chr6 (18-227)||(27662622-27662831)
chr6 (13-263)||(27681625-27681875)
chr6 (28-267)||(25513539-25513778)
chr6 (28-267)||(26145661-26145900)
chr6 (28-267)||(27608380-27608619)
chr6 (33-267)||(25485654-25485888)
chr6 (14-267)||(26961775-26962028)
chr6 (14-144)||(26649263-26649393)
chr6 (14-144)||(26755231-26755361)
chr6 (201-267)||(27703650-27703716)
chr6 (33-144)||(28795196-28795307)
chr6 (30-144)||(26886896-26887010)
chr6 (172-267)||(26980074-26980168)
chr6 (33-82)||(25491406-25491455)
chr6 (28-81)||(25582557-25582610)
chr6 (28-81)||(26058769-26058822)
chr6 (28-81)||(26078739-26078792)
chr6 (167-267)||(26658646-26658746)
chr6 (167-267)||(26764617-26764717)
chr6 (33-144)||(28789172-28789283)
chr6 (28-82)||(27601982-27602037)
chr6 (28-82)||(26851359-26851413)
chr6 (33-142)||(26876363-26876472)
chr6 (14-78)||(26952471-26952535)
chr6 (30-81)||(26638252-26638303)
chr6 (30-81)||(26744218-26744269)
chr6 (28-82)||(26625981-26626035)
chr6 (28-82)||(26731958-26732012)
chr6 (14-82)||(27657987-27658055)
chr6 (170-217)||(27602125-27602172)
chr6 (33-81)||(25076743-25076791)
chr6 (171-219)||(26638114-26638162)
chr6 (171-219)||(26744080-26744128)
[»] chr1 (2 HSPs)
chr1 (17-267)||(265580-265830)
chr1 (33-144)||(28124889-28125000)
[»] scaffold0349 (1 HSPs)
scaffold0349 (19-263)||(15950-16194)
[»] chr8 (2 HSPs)
chr8 (28-267)||(29271099-29271338)
chr8 (33-140)||(22024067-22024174)
[»] scaffold0277 (2 HSPs)
scaffold0277 (33-263)||(1953-2183)
scaffold0277 (33-144)||(10916-11027)
[»] chr4 (8 HSPs)
chr4 (28-142)||(18686914-18687028)
chr4 (28-142)||(18696708-18696822)
chr4 (28-89)||(18721379-18721440)
chr4 (28-88)||(18652783-18652843)
chr4 (28-88)||(18676865-18676925)
chr4 (33-89)||(18728806-18728862)
chr4 (28-88)||(18682067-18682127)
chr4 (28-88)||(18726299-18726358)
[»] scaffold0419 (1 HSPs)
scaffold0419 (33-219)||(10247-10433)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 27674823 - 27675025
Alignment:
Q  17 tagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttg 116  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||| ||||    
T  27674823 tagtgcaataaaaaacaacaactaacctgactcattaacattcttctacatgaggaactcaatgatttacattgatatgcggaaagctctttaagatttg 27674922  T
Q  117 gtggaatccctctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaatt 216  Q
    |||||||||||||||||| |||||||||| | | ||||| ||||  ||  ||||||||||||||||||||||||||||||| | |||||| |||||||||    
T  27674923 gtggaatccctctaatttcctcaagagaagagcagtaatgcaaaccaagatgcttaagatggtgacattcactaaggcactcaggaagaattttgaaatt 27675022  T
Q  217 gtt 219  Q
    |||    
T  27675023 gtt 27675025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 26805417 - 26805211
Alignment:
Q  15 tatagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtt 114  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   | ||| ||||||||||  || ||    
T  26805417 tatagtgcaataaaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagctcttttagatt 26805318  T
Q  115 tggtggaatccctctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaa 214  Q
     ||||||||||||||||||| |||||||||    | ||||  ||||| ||  |||||||||||||||||||||||||| |||| | |||||| |||||||    
T  26805317 cggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaa 26805218  T
Q  215 ttgttgt 221  Q
    |||||||    
T  26805217 ttgttgt 26805211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 27695838 - 27696090
Alignment:
Q  15 tatagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtt 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||| ||  | ||   | |||| ||    
T  27695838 tatagtgcaataaaaaacaacaacaaacctgactcattaacattcttctacatgatgaactcaatgatttgcattcataagcatagagacttccaagatt 27695937  T
Q  115 tggtggaatccctctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaa 214  Q
    |||||||||||||||||||| |||||| ||    | |||  ||| | |||||| |  ||||||||||| ||||||||||||||   |||||| |||||||    
T  27695938 tggtggaatccctctaatttcctcaagggacttgcagtacctcacaataatttccacaagatggtgactttcactaaggcactctggaagaattttgaaa 27696037  T
Q  215 ttgttgtccattaaatttagagatgtcatattaacacaccacttgagaagtat 267  Q
    | | | |    ||||| |||| |||||||||||||||||||||||||||||||    
T  27696038 tcgctatatgataaatctagatatgtcatattaacacaccacttgagaagtat 27696090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 31287477 - 31287366
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccctctaat 132  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| |||  ||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  31287477 aacaacaaacctgactcgttaacattcttctacttgaggaactcaacgattcacatttataagcggaaagctcttcaagatttggtggaatccctctaat 31287378  T
Q  133 tttctcaagaga 144  Q
    || |||||||||    
T  31287377 ttcctcaagaga 31287366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 27590373 - 27590502
Alignment:
Q  15 tatagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtt 114  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||  ||| ||   || | ||||||| ||    
T  27590373 tatagtgcaataaaaaacaacaacaaacctgattcattaacattcttctacttgatgaactcaatgattcacatccataagcatcaaccacttcaagatt 27590472  T
Q  115 tggtggaatccctctaattttctcaagaga 144  Q
    |||||||||||||||||||| |||||||||    
T  27590473 tggtggaatccctctaatttcctcaagaga 27590502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 25547883 - 25547641
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccct 127  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||   ||| |  | |||  |||||  |||||| |||||||||||||||    
T  25547883 aaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcaaaaagcctttcaagatttggtggaatccct 25547784  T
Q  128 ctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaatt---gttgtcca 224  Q
    ||||||| ||||||| ||   | ||  ||||||| || ||| ||||||||||||||||| |||||||||| | |||||| | |||||||   ||| |||     
T  25547783 ctaatttcctcaagaaaattgcagttcttcaaataaagttgtttaagatggtgacattcgctaaggcactcaggaagaattgtgaaattatcgttctccg 25547684  T
Q  225 ttaaatttagagatgtcatattaacacaccacttgagaagtat 267  Q
     ||| | |||| |||||| ||||||| ||||||||||||||||    
T  25547683 ataagtctagaaatgtcacattaacaaaccacttgagaagtat 25547641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 27715751 - 27715995
Alignment:
Q  19 gtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggt 118  Q
    |||| ||| ||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||  ||||   | |||   || |||||  || ||||||    
T  27715751 gtgctatataaaacaacaactaacctgactcattaatattcttttacttgaggaactcaatgattgacatccttgtgcattaatctcttttagatttggt 27715850  T
Q  119 ggaatccctctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgt 218  Q
    |||||||||||||||| |||||| ||    | |||   || ||||||||    |||||||||||||||||||||||||| | |||||| ||||||||||     
T  27715851 ggaatccctctaatttcctcaagggactcgcagtaccccacattaatttcaacaagatggtgacattcactaaggcactcaggaagaattttgaaattgc 27715950  T
Q  219 tgtccattaaatttagagatgtcatattaacacaccacttgagaa 263  Q
    | |  | ||| ||||||||||||||||||||||||||||||||||    
T  27715951 tatataataagtttagagatgtcatattaacacaccacttgagaa 27715995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 27662622 - 27662831
Alignment:
Q  18 agtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttgg 117  Q
    ||||||| | |||| || ||||||||||||||| |||||||||||||||||| |||||||||||| |||||   | |||  |||| | |   || || ||    
T  27662622 agtgcaagataaaataaaaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacatccttctgcataaagatttgttagattggg 27662721  T
Q  118 tggaatccctctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattg 217  Q
    ||||||||||||||||| |||||||||   || ||||| ||||| ||  |||| ||||| |||||||||||||||||||||  |||||| |||||||||     
T  27662722 tggaatccctctaatttcctcaagagactcacagtaatccaaataaagatgctcaagatagtgacattcactaaggcacttgggaagaattttgaaattt 27662821  T
Q  218 ttgtccatta 227  Q
    ||||||||||    
T  27662822 ttgtccatta 27662831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 27681875 - 27681625
Alignment:
Q  13 aatatagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatat-gcggaaagctcttcaag 111  Q
    ||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| | || | ||  |||||||||  ||    
T  27681875 aatattgtgctatataaaacaacaactaacctgactcattaacattcttctacttgaggaactcaatgatttacaat-atctagcacaaagctcttttag 27681777  T
Q  112 gtttggtggaatccctctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttg 211  Q
     |||||||||||||||||||||| |||||||||    | | |  ||| ||||||||    ||||||||||||||||| |||||||| | |||||| ||||    
T  27681776 atttggtggaatccctctaatttcctcaagagactcgcagcacatcacattaatttcaacaagatggtgacattcacgaaggcactcaggaagaattttg 27681677  T
Q  212 aaattgttgtccattaaatttagagatgtcatattaacacaccacttgagaa 263  Q
    |||||| |      ||| | ||||  ||||||||||||||||||||||||||    
T  27681676 aaattgctaaatgataagtctagatgtgtcatattaacacaccacttgagaa 27681625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 25513778 - 25513539
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccct 127  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||   ||| |  | |||  |||||  |||||| |||||||||||||||    
T  25513778 aaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcaaaaagcctttcaagatttggtggaatccct 25513679  T
Q  128 ctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgttgtccatta 227  Q
    ||||||| ||||||||     |   | ||||||| ||  ||||||||| ||||| |||||| ||||||||   |||||| | |||||||||| |||  ||    
T  25513678 ctaatttcctcaagagccttgcaaaacttcaaataaagatgcttaagacggtgatattcaccaaggcactcgggaagaattgtgaaattgttctccgata 25513579  T
Q  228 aatttagagatgtcatattaacacaccacttgagaagtat 267  Q
    | | |||| |||||| ||||||| ||||||||||||||||    
T  25513578 agtctagaaatgtcacattaacaaaccacttgagaagtat 25513539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 26145900 - 26145661
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccct 127  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||   ||| |  | |||  |||||  |||||| |||||||||||||||    
T  26145900 aaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcacaaagcctttcaagatttggtggaatccct 26145801  T
Q  128 ctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgttgtccatta 227  Q
    ||||||| ||||||||     |   | ||||||| ||  ||||||||| |||||||||||| ||||||||   |||||| | |||||| ||| |||  ||    
T  26145800 ctaatttcctcaagagcctcgcaaaacttcaaataaagatgcttaagacggtgacattcaccaaggcactcgggaagaattgtgaaatagttctccgata 26145701  T
Q  228 aatttagagatgtcatattaacacaccacttgagaagtat 267  Q
    | | |||| |||||| ||||||| ||||||||||||||||    
T  26145700 agtctagaaatgtcacattaacaaaccacttgagaagtat 26145661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 267
Target Start/End: Original strand, 27608380 - 27608619
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccct 127  Q
    ||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||| | ||||    ||| ||||||  || ||| |||||||||||||||    
T  27608380 aaaacaacaactaacctgactcattaactttcttttacttgaggaactcaatgatttgcattcgcttgcagaaagccatttaagatttggtggaatccct 27608479  T
Q  128 ctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgttgtccatta 227  Q
    ||||||| |||||| ||    | ||   ||| | ||||| |   |||||||||||||||||||||||||| | |||||| |||||||||| | |    ||    
T  27608480 ctaatttcctcaagggactcgcagtccctcacagtaattagaacaagatggtgacattcactaaggcactcaggaagaattttgaaattgctatatgata 27608579  T
Q  228 aatttagagatgtcatattaacacaccacttgagaagtat 267  Q
    | | |||| |||||| ||||||| ||||||||||||||||    
T  27608580 agtctagacatgtcacattaacaaaccacttgagaagtat 27608619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 267
Target Start/End: Complemental strand, 25485888 - 25485654
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccctctaat 132  Q
    ||||||||||||||||||||||||||||| ||||||| ||| |||||||   ||| |  | |||  |||||  |||||| ||||||||||||||||||||    
T  25485888 aacaacaaacctgactcattaacattcttatacttgaggaattcaatgaataacactcgtttgcaaaaagcctttcaagatttggtggaatccctctaat 25485789  T
Q  133 tttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgttgtccattaaattt 232  Q
    || ||||||||     |  |  ||||||| ||  ||||||||| |||||||||||| ||||||||   |||||| | |||||||||| | |  ||| | |    
T  25485788 ttcctcaagagccttgcacttcttcaaataaagatgcttaagacggtgacattcaccaaggcactcgggaagaattgtgaaattgttctgcgataagtct 25485689  T
Q  233 agagatgtcatattaacacaccacttgagaagtat 267  Q
    ||| |||||| ||||||| ||||||||||||||||    
T  25485688 agaaatgtcacattaacaaaccacttgagaagtat 25485654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 26962028 - 26961775
Alignment:
Q  14 atatagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggt 113  Q
    ||||| ||||| | ||||||||||||||||||||||| || | |||||||||||    |||||||||||  ||||    |||| ||||||  | |||| |    
T  26962028 atatattgcaagataaaacaacaacaaacctgactcaatagccttcttctactttccaaactcaatgattcacatctcaatgcagaaagccgtccaagat 26961929  T
Q  114 ttggtggaatccctctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaa 213  Q
    ||||||||||||||||||||| ||||||| |    | || || |||   ||  | |  |||| |||||||||||||||||||||   |||||| ||||||    
T  26961928 ttggtggaatccctctaatttcctcaagaaacttgcagtcatccaacacaagctccccaagacggtgacattcactaaggcactcgggaagaattttgaa 26961829  T
Q  214 attgttgtccattaaatttagagatgtcatattaacacaccacttgagaagtat 267  Q
    |||||| | |||||| ||||||||||||| ||||||| || |||||||||||||    
T  26961828 attgttcttcattaattttagagatgtcacattaacaaacaacttgagaagtat 26961775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 26649393 - 26649263
Alignment:
Q  14 atatagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggt 113  Q
    ||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||  ||||    |||| ||||||  || ||| |    
T  26649393 atatattgcaagataaaacaacaacgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagat 26649294  T
Q  114 ttggtggaatccctctaattttctcaagaga 144  Q
    ||||||||||||| ||||||| |||||||||    
T  26649293 ttggtggaatccccctaatttcctcaagaga 26649263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 26755361 - 26755231
Alignment:
Q  14 atatagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggt 113  Q
    ||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||  ||||    |||| ||||||  || ||| |    
T  26755361 atatattgcaagataaaacaacaacgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagat 26755262  T
Q  114 ttggtggaatccctctaattttctcaagaga 144  Q
    ||||||||||||| ||||||| |||||||||    
T  26755261 ttggtggaatccccctaatttcctcaagaga 26755231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 27703650 - 27703716
Alignment:
Q  201 gaagaactttgaaattgttgtccattaaatttagagatgtcatattaacacaccacttgagaagtat 267  Q
    |||||| |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||    
T  27703650 gaagaattttgaaattgttgtacattaagtctagagatgtcatattaacacaccacttgagaagtat 27703716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 28795307 - 28795196
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccctctaat 132  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||| | |||     ||| ||||||  |||||| ||||||||||||||||||||    
T  28795307 aacaacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtggaatccctctaat 28795208  T
Q  133 tttctcaagaga 144  Q
    || ||| |||||    
T  28795207 ttcctcgagaga 28795196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 26887010 - 26886896
Alignment:
Q  30 aacaacaacaaacctgactcattaacattcttctacttgatgaactcaatg-atgtacattgatatgcggaaagctcttcaaggtttggtggaatccctc 128  Q
    ||||| ||||||||||||||| |||||||||||||||||| |||||||||| |||    || ||| || ||||| |||| ||| |||||||| |||||||    
T  26887010 aacaaaaacaaacctgactcaataacattcttctacttgaggaactcaatgaatggcattttata-gcagaaaggtctttaagatttggtggtatccctc 26886912  T
Q  129 taattttctcaagaga 144  Q
    |||||| |||||||||    
T  26886911 taatttcctcaagaga 26886896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 26980168 - 26980074
Alignment:
Q  172 aagatggtgacattcactaaggcacttatgaagaactttgaaattgttgtccattaaatttagagatgtcatattaacacaccacttgagaagtat 267  Q
    |||||||||||||||| ||||||||| | | |||| |||||||||||||| | |||| |||| | |||||| ||||||| ||||||||||||||||    
T  26980168 aagatggtgacattcattaaggcactcaggtagaattttgaaattgttgttc-ttaagtttaaatatgtcacattaacaaaccacttgagaagtat 26980074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 25491406 - 25491455
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgat 82  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  25491406 aacaacaaacctgactcaataacattcttctacttgaggaactcaatgat 25491455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25582610 - 25582557
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatga 81  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  25582610 aaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatga 25582557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 26058822 - 26058769
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatga 81  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  26058822 aaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatga 26058769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 26078792 - 26078739
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatga 81  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  26078792 aaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatga 26078739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 26658746 - 26658646
Alignment:
Q  167 tgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgttgtccattaaatttagagatgtcatattaacacaccacttgagaagta 266  Q
    ||||||||| |||||||||||||||||||||   | |||| |||||||||||| |    ||| |||||| || ||| |||||||||||||||||||||||    
T  26658746 tgcttaagaaggtgacattcactaaggcactcgggtagaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagta 26658647  T
Q  267 t 267  Q
    |    
T  26658646 t 26658646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 26764717 - 26764617
Alignment:
Q  167 tgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgttgtccattaaatttagagatgtcatattaacacaccacttgagaagta 266  Q
    ||||||||| |||||||||||||||||||||   | |||| |||||||||||| |    ||| |||||| || ||| |||||||||||||||||||||||    
T  26764717 tgcttaagaaggtgacattcactaaggcactcgggtagaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagta 26764618  T
Q  267 t 267  Q
    |    
T  26764617 t 26764617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 28789283 - 28789172
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacat-tgatatgcggaaagctcttcaaggtttggtggaatccctctaa 131  Q
    |||||||||||||||||| || |||| |||||||||| |||||||||||| | |||  ||| ||| ||||||  | |||| |||||||||||||||||||    
T  28789283 aacaacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgat-tgcagaaagccttgcaagatttggtggaatccctctaa 28789185  T
Q  132 ttttctcaagaga 144  Q
    ||| ||| |||||    
T  28789184 tttcctccagaga 28789172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 27601982 - 27602037
Alignment:
Q  28 aaaacaacaa-caaacctgactcattaacattcttctacttgatgaactcaatgat 82  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  27601982 aaaacaacaaacaaacctgactcaataacattcttctacttgaggaactcaatgat 27602037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 26851413 - 26851359
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgat 82  Q
    ||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  26851413 aaaacaataacaaacctgactcaataacattcttctgcttgaggaactcaatgat 26851359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 26876472 - 26876363
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccctctaat 132  Q
    ||||||||||||| || | |||||||||||||||||||| | ||||||||   |||||   ||| ||||||  ||| |  ||||||||||||||||||||    
T  26876472 aacaacaaacctgtctaaataacattcttctacttgatggattcaatgattcgcattgccttgcagaaagcctttctatatttggtggaatccctctaat 26876373  T
Q  133 tttctcaaga 142  Q
    || |||||||    
T  26876372 ttcctcaaga 26876363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 26952535 - 26952471
Alignment:
Q  14 atatagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaa 78  Q
    ||||| ||||| | ||||||||||||||||||||||| || ||||||||||||||  ||||||||    
T  26952535 atatattgcaagataaaacaacaacaaacctgactcaatagcattcttctacttgcggaactcaa 26952471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 26638303 - 26638252
Alignment:
Q  30 aacaacaacaaacctgactcattaacattcttctacttgatgaactcaatga 81  Q
    ||||||||||||||||||||| || | ||||||||||||| |||||||||||    
T  26638303 aacaacaacaaacctgactcaatagccttcttctacttgaggaactcaatga 26638252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 26744269 - 26744218
Alignment:
Q  30 aacaacaacaaacctgactcattaacattcttctacttgatgaactcaatga 81  Q
    ||||||||||||||||||||| || | ||||||||||||| |||||||||||    
T  26744269 aacaacaacaaacctgactcaatagccttcttctacttgaggaactcaatga 26744218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 26626035 - 26625981
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgat 82  Q
    ||||| ||||||||||||||| | ||||||||||||| |||| ||||||||||||    
T  26626035 aaaaccacaacaaacctgacttaataacattcttctagttgaggaactcaatgat 26625981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 26732012 - 26731958
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgat 82  Q
    ||||| ||||||||||||||| | ||||||||||||| |||| ||||||||||||    
T  26732012 aaaaccacaacaaacctgacttaataacattcttctagttgaggaactcaatgat 26731958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 27657987 - 27658055
Alignment:
Q  14 atatagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgat 82  Q
    ||||| ||||| | ||||||||||||||||||||| | ||||||||||||| ||||  |||||| ||||    
T  27657987 atatactgcaacacaaaacaacaacaaacctgactaaataacattcttctagttgagaaactcagtgat 27658055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 27602125 - 27602172
Alignment:
Q  170 ttaagatggtgacattcactaaggcacttatgaagaactttgaaattg 217  Q
    |||||| ||||||||||||||||||||| | |||||| ||||||||||    
T  27602125 ttaagaaggtgacattcactaaggcactcaggaagaattttgaaattg 27602172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 25076791 - 25076743
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatga 81  Q
    ||||||||||||||| || |||||||||||||||||  ||| |||||||    
T  25076791 aacaacaaacctgacccaataacattcttctacttgtggaattcaatga 25076743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 26638162 - 26638114
Alignment:
Q  171 taagatggtgacattcactaaggcacttatgaagaactttgaaattgtt 219  Q
    ||||| |||||||| |||||||||||| | |||||| ||||||||||||    
T  26638162 taagaaggtgacatacactaaggcactcaggaagaattttgaaattgtt 26638114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 26744128 - 26744080
Alignment:
Q  171 taagatggtgacattcactaaggcacttatgaagaactttgaaattgtt 219  Q
    ||||| |||||||| |||||||||||| | |||||| ||||||||||||    
T  26744128 taagaaggtgacatacactaaggcactcaggaagaattttgaaattgtt 26744080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 265580 - 265830
Alignment:
Q  17 tagtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttg 116  Q
    |||||||||| ||||||||||||||||||||||| |||||||||| ||||||| |||||||||||  | |||| ||| ||  ||||||||| ||| ||||    
T  265580 tagtgcaataaaaaacaacaacaaacctgactcaataacattcttttacttgaggaactcaatgagttgcattcatacgcaaaaagctctttaagatttg 265679  T
Q  117 gtggaatccctctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaatt 216  Q
    |||||||||||||||||| ||||||| |    | |||| |||  |||||||    |||||||||||||||||||||||||| | |||||  |||||| ||    
T  265680 gtggaatccctctaatttcctcaagatacttgcagtaactcacgttaattttaacaagatggtgacattcactaaggcactcaggaagagttttgaactt 265779  T
Q  217 gttgtccattaaatttagagatgtcatattaacacaccacttgagaagtat 267  Q
    | | | |||||| |||||| || ||| ||||||||||||||||||||||||    
T  265780 gctcttcattaagtttagatatatcacattaacacaccacttgagaagtat 265830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 28124889 - 28125000
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccctctaat 132  Q
    ||||||||||||| |||| || ||||||||||| ||| ||| | ||||||  |||| |   ||| |||| |  ||  |||||||||||||||||||||||    
T  28124889 aacaacaaacctggctcaatagcattcttctacatgaggaagttaatgattcacatcgcattgcagaaaaccattttaggtttggtggaatccctctaat 28124988  T
Q  133 tttctcaagaga 144  Q
    || |||||||||    
T  28124989 ttcctcaagaga 28125000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 16194 - 15950
Alignment:
Q  19 gtgcaatagaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggt 118  Q
    |||| ||| ||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||  ||||   | |||   || |||||  || ||||||    
T  16194 gtgctatataaaacaacaactaacctgactcattaatattcttttacttgaggaactcaatgattgacatccttgtgcattaatctcttttagatttggt 16095  T
Q  119 ggaatccctctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgt 218  Q
    |||||||||||||||| |||||| ||    | |||   || ||||||||    |||||||||||||||||||||||||| | |||||| ||||||||||     
T  16094 ggaatccctctaatttcctcaagggactcgcagtaccccacattaatttcaacaagatggtgacattcactaaggcactcaggaagaattttgaaattgc 15995  T
Q  219 tgtccattaaatttagagatgtcatattaacacaccacttgagaa 263  Q
    | |  | ||| ||||||||||||||||||||||||||||||||||    
T  15994 tatataataagtttagagatgtcatattaacacaccacttgagaa 15950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 267
Target Start/End: Original strand, 29271099 - 29271338
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccct 127  Q
    ||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||  ||| |  |   | ||||||||||  || |||||||||||||||    
T  29271099 aaaacaacaactaacctgactcattaacattcttttacttgaggaactcaatgattcacaatattcaacagaaagctcttttagatttggtggaatccct 29271198  T
Q  128 ctaattttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgttgtccatta 227  Q
    ||||||| || |||||||   | |  | ||| ||||||||  | ||||||| |||||||||||||||||| | |||||| |||||||| |||      ||    
T  29271199 ctaatttccttaagagaatggcagccactcatattaattttataaagatggagacattcactaaggcactcaggaagaattttgaaatagttaaatgata 29271298  T
Q  228 aatttagagatgtcatattaacacaccacttgagaagtat 267  Q
    | | |||| |||||| ||||||||||||||||||||||||    
T  29271299 agtctagatatgtcacattaacacaccacttgagaagtat 29271338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 22024174 - 22024067
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccctctaat 132  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||    ||| ||||||  |||||| ||||||||||||||||||||    
T  22024174 aacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttgcattctattgcagaaagcctttcaagatttggtggaatccctctaat 22024075  T
Q  133 tttctcaa 140  Q
    || |||||    
T  22024074 ttcctcaa 22024067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 263
Target Start/End: Original strand, 1953 - 2183
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccctctaat 132  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||| | |||     ||| ||||||  |||||| ||||||||||||||||||||    
T  1953 aacaacaaacctgactcaatagcattcttctacttgaagaactcaatgatttgcatcccattgcagaaagcatttcaagatttggtggaatccctctaat 2052  T
Q  133 tttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgttgtccattaaattt 232  Q
    || ||| |||||    | || || |||  |||     |||||| ||||||||||||||||||||| | ||| || |||||||||||| |    ||| | |    
T  2053 ttcctccagagacttgcagttatccaatataaggatattaagaaggtgacattcactaaggcactcaggaataagtttgaaattgttatatgataagtct 2152  T
Q  233 agagatgtcatattaacacaccacttgagaa 263  Q
    |||||||||| ||||||||||||||||||||    
T  2153 agagatgtcacattaacacaccacttgagaa 2183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 10916 - 11027
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacat-tgatatgcggaaagctcttcaaggtttggtggaatccctctaa 131  Q
    |||||||||||||||||| || |||| |||||||||| |||||||||||| | |||  ||| ||| ||||||  | |||| |||||||||||||||||||    
T  10916 aacaacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgat-tgcagaaagccttgcaagatttggtggaatccctctaa 11014  T
Q  132 ttttctcaagaga 144  Q
    ||| ||| |||||    
T  11015 tttcctccagaga 11027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 18686914 - 18687028
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccct 127  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| | ||||||   ||| | ||  || || ||||||||||||    
T  18686914 aaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacaatcatatgcatcaagatatttgagattcggtggaatccct 18687013  T
Q  128 ctaattttctcaaga 142  Q
    ||||||| |||||||    
T  18687014 ctaatttcctcaaga 18687028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 18696708 - 18696822
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccct 127  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||||   ||| | ||  || || ||||||| ||||    
T  18696708 aaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacatcgatatgcatcaagatatttgagattcggtggaagccct 18696807  T
Q  128 ctaattttctcaaga 142  Q
    ||||||| |||||||    
T  18696808 ctaatttcctcaaga 18696822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 18721379 - 18721440
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacatt 89  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  18721379 aaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacatt 18721440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 18652783 - 18652843
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacat 88  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||    
T  18652783 aaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacat 18652843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 18676865 - 18676925
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacat 88  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||    
T  18676865 aaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacat 18676925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 18728806 - 18728862
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacatt 89  Q
    |||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||||    
T  18728806 aacaacaaacctgactcaataacattcttctagttgaggaactcaatgatttacatt 18728862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 18682067 - 18682127
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacat 88  Q
    |||||||||||||||||||||||  |||||||||||| ||||  ||||||||||| |||||    
T  18682067 aaaacaacaacaaacctgactcaacaacattcttctatttgagcaactcaatgatttacat 18682127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 18726299 - 18726358
Alignment:
Q  28 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacat 88  Q
    |||||||||||||||||||||||  || | ||||||| |||| |||||||||||| |||||    
T  18726299 aaaacaacaacaaacctgactcaacaa-aatcttctatttgaggaactcaatgatttacat 18726358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 219
Target Start/End: Complemental strand, 10433 - 10247
Alignment:
Q  33 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatgtacattgatatgcggaaagctcttcaaggtttggtggaatccctctaat 132  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||| | |||     ||| ||||||  |||||| ||||||| ||||||||||||    
T  10433 aacaacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtgcaatccctctaat 10334  T
Q  133 tttctcaagagaacaacggtaattcaaattaatttgcttaagatggtgacattcactaaggcacttatgaagaactttgaaattgtt 219  Q
    || ||| |||||    | || || |||  |||  |  |||||| ||||||||||||||||||||| | ||| || ||||||||||||    
T  10333 ttcctccagagacttgcagttatccaatataaggttattaagaaggtgacattcactaaggcactcaggaataagtttgaaattgtt 10247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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