View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18216_high_14 (Length: 250)
Name: NF18216_high_14
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18216_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 33511776 - 33512019
Alignment:
| Q |
1 |
aaatggttattaaattttatttaaaaatggatcgtttagataatataagttaaaattctaactaaaacaaccattgatcagactttatatacctttcgat |
100 |
Q |
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|||||||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
33511776 |
aaatggttattaaattttatctaaagatgaatcgttcagataatctaagttaaaattctcactaaaacaatcattgatcagactttatatacctttcgat |
33511875 |
T |
|
| Q |
101 |
cgaacatctgatcaatagggctcgtttctttaaaaaccggagggttaaggtcaagatataaaaagtccaaaacaaaattaattataaaaattgttaagct |
200 |
Q |
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|||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33511876 |
tgaacatttgatcagtaggactcgtttctttaaaaactggagggttaaggtcaagatataaaaattccaaaacaaaattaattataaaaattgttaagct |
33511975 |
T |
|
| Q |
201 |
ttgaagtttcaactcatcaattagaatttatgtacctatgctac |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33511976 |
ttgaagtttcaactcatcaattagaatttatgtacttatgctac |
33512019 |
T |
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