View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18216_high_2 (Length: 624)
Name: NF18216_high_2
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18216_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 609
Target Start/End: Complemental strand, 10689634 - 10689038
Alignment:
| Q |
19 |
tttgcttctctatgcctatttgccgttcaaaagtgcatcaagaagttactactgctgaggatttgg--ggg----agatccggagacagcgatattctga |
112 |
Q |
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| T |
10689634 |
tttgtttctctatgccgctttgcagttcaaaagtggatcaagaagttactatctctgaggatttggttgggctgaagacccggagacagcgatcttatga |
10689535 |
T |
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| Q |
113 |
tgttgataatagtccagaatctttactcgtttttagtggaaacaacaatgtgcatagtttatacgacctattactgaattacaaaactctattaacctcg |
212 |
Q |
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| T |
10689534 |
tgttgataatagtccagaatctttgctcgtttttagtggaaacaacaatgtgcatggtttatacgacctattactaaattacaaaactctattggcctcg |
10689435 |
T |
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| Q |
213 |
ctatccggtgtggaagatgtacctgtcttgtgttctcctgttccattccaaaattctgctatgacttctcctgatattaaatgcatggaaacgacaagag |
312 |
Q |
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| T |
10689434 |
ctgtccggtgtggaagatgtacctgtcttgtgttctcctgttccattccaaaattctgctatgacttctcctgatattaaatgcatggagatgacaagag |
10689335 |
T |
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| Q |
313 |
ctgaaaacattgcacaaggatcatcaaatggtcttttttatagcattgaagttaaggatgcaattattccaccatggattatctgcaatatatgtgcatt |
412 |
Q |
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| T |
10689334 |
ctgaagatattgcacaaggatcatcaaatgaccttttttatagcattgaagttaaggatgcaattattccaccgtggattatctgcaatatatgtgcatt |
10689235 |
T |
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| Q |
413 |
gatgatgggatcccaagggagaagaaactttgaggcaagttttgtgactgaaccactctcaattggcctcaatgtcgctttgaaatcaatttgtgataat |
512 |
Q |
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| T |
10689234 |
gatgatgggatcccaagggagaagaaactttgaggcaagttttgtgactgaaccactctcaattggcctcaatgttgctttgaaatcaatttgtgataat |
10689135 |
T |
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| Q |
513 |
tcctttggtattccaaaagcagcagttatgtcttctctatgttcatgtacactcaaaagtgtaaactactgtgatgattcttatttagcatcattat |
609 |
Q |
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| T |
10689134 |
tcctttggtattccaaaagcagcagttatgtcttctctatgttcatgtacactcaaaagtgtaaactactgtgatggttcttatttagcatcattat |
10689038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 509 - 604
Target Start/End: Original strand, 43560265 - 43560360
Alignment:
| Q |
509 |
taattcctttggtattccaaaagcagcagttatgtcttctctatgttcatgtacactcaaaagtgtaaactactgtgatgattcttatttagcatc |
604 |
Q |
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| T |
43560265 |
taattcctttggcattccagaagctgcagttacgtcttccctatgttcatgtacactaaaaagtgtaaagtactgtgatggttcttatatagcatc |
43560360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 43559255 - 43559349
Alignment:
| Q |
322 |
ttgcacaaggatcatcaaatggtcttttttatagcattgaagttaaggatgcaattattccaccatggattatctgcaatatatgtgcattgatg |
416 |
Q |
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| T |
43559255 |
ttgcacaaggatcatcagatggtcttttatgtagcattgaaattaaggatacatttattccaccttggattatcagccgtatatgtgcattgatg |
43559349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 43558882 - 43558935
Alignment:
| Q |
234 |
cctgtcttgtgttctcctgttccattccaaaattctgctatgacttctcctgat |
287 |
Q |
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| T |
43558882 |
cctgtcttgtgttctcctgttccgttccaaagttctgctttgacttctcctgat |
43558935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 43558645 - 43558732
Alignment:
| Q |
108 |
tctgatgttgataatagtccagaatctttactcgtttttagtggaaacaacaatgtgcatagtttatacgacctattactgaattaca |
195 |
Q |
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| T |
43558645 |
tctgacgttgataatagcccagaatcattgctggttttcagtggcagcaacaatgtgcatggcttatttgacctattactgaattaca |
43558732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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