View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18216_high_5 (Length: 415)

Name: NF18216_high_5
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18216_high_5
NF18216_high_5
[»] chr7 (3 HSPs)
chr7 (78-405)||(24760350-24760677)
chr7 (255-347)||(11504477-11504569)
chr7 (1-37)||(24759548-24759584)
[»] chr3 (3 HSPs)
chr3 (78-405)||(52127785-52128112)
chr3 (1-81)||(52126959-52127039)
chr3 (247-302)||(53690040-53690095)
[»] chr4 (1 HSPs)
chr4 (205-347)||(37618066-37618208)
[»] chr6 (5 HSPs)
chr6 (205-347)||(22081760-22081906)
chr6 (247-352)||(27445112-27445217)
chr6 (247-347)||(20909783-20909882)
chr6 (247-347)||(20924231-20924330)
chr6 (1-32)||(34008681-34008712)
[»] chr5 (1 HSPs)
chr5 (78-205)||(40163784-40163915)
[»] scaffold0003 (2 HSPs)
scaffold0003 (247-352)||(42141-42246)
scaffold0003 (247-352)||(35471-35575)
[»] chr1 (1 HSPs)
chr1 (247-347)||(41326677-41326777)
[»] chr8 (2 HSPs)
chr8 (247-347)||(43227181-43227279)
chr8 (249-335)||(42312909-42312995)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 78 - 405
Target Start/End: Original strand, 24760350 - 24760677
Alignment:
Q  78 ttttaattatgtgatttaagaacattatttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacat 177  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24760350 ttttaattacgtgatttaagaacattatttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacat 24760449  T
Q  178 caatgatgatgttgttcatgtaacttttaatgagtctggtgttacaaaatgagcttgaagatgaattgggaacattgaattcacttgcattttgattcct 277  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24760450 ctatgatgatgttgttcatgtaacttttaatgagtctggtgttacaaaatgagcttgaagatgaattgggaacattgaattcacttgcattttgattcct 24760549  T
Q  278 tttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttagaaacaaaatcaaaaccactaccataattttga 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24760550 tttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttagaaacaaaatcaaaaccactaccataattttga 24760649  T
Q  378 atgttggtgttgggttttaaactctctg 405  Q
    ||||||||||||| ||||||||||||||    
T  24760650 atgttggtgttggattttaaactctctg 24760677  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 347
Target Start/End: Original strand, 11504477 - 11504569
Alignment:
Q  255 aattcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttagaa 347  Q
    ||||||||||| |||||| |  |  ||| |||||||||||||||||||| |||   ||||||||||||||| ||||||||| | |||||||||    
T  11504477 aattcacttgctttttgaattttcctagagtttggtgttctatgttaaaaaaatttaaaaccactaccatatgatgaagcaagagttttagaa 11504569  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24759548 - 24759584
Alignment:
Q  1 tcgttccagccgttggattaatctatgttgctccaaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  24759548 tcgttccagccgttggattaatctatgttgctccaaa 24759584  T

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Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 78 - 405
Target Start/End: Original strand, 52127785 - 52128112
Alignment:
Q  78 ttttaattatgtgatttaagaacattatttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacat 177  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127785 ttttaattacgtgatttaagaacattatttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacat 52127884  T
Q  178 caatgatgatgttgttcatgtaacttttaatgagtctggtgttacaaaatgagcttgaagatgaattgggaacattgaattcacttgcattttgattcct 277  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127885 ctatgatgatgttgttcatgtaacttttaatgagtctggtgttacaaaatgagcttgaagatgaattgggaacattgaattcacttgcattttgattcct 52127984  T
Q  278 tttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttagaaacaaaatcaaaaccactaccataattttga 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127985 tttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttagaaacaaaatcaaaaccactaccataattttga 52128084  T
Q  378 atgttggtgttgggttttaaactctctg 405  Q
    ||||||||||||| ||||||||||||||    
T  52128085 atgttggtgttggattttaaactctctg 52128112  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 52126959 - 52127039
Alignment:
Q  1 tcgttccagccgttggattaatctatgttgctccaaatttcaactagctccaaatttgaatttcaactagctccaaatttt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52126959 tcgttccagccgttggattaatctatgttgctccaaatttcaactagctccaaatttgaatttcaactagctccaaatttt 52127039  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 53690040 - 53690095
Alignment:
Q  247 gaacattgaattcacttgcattttgattccttttagggtttggtgttctatgttaa 302  Q
    ||||||||||||||||| | |||||| || | |||| |||||||||||||||||||    
T  53690040 gaacattgaattcactttctttttgaatcttcttagagtttggtgttctatgttaa 53690095  T

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Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 205 - 347
Target Start/End: Complemental strand, 37618208 - 37618066
Alignment:
Q  205 taatgagtctggtgttacaaaatgagcttgaagatgaattgggaacattgaattcacttgcattttgattccttttagggtttggtgttctatgttaaac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||| ||     
T  37618208 taatgagtctggtgttacaaaatgagcttgaagatgaattgggaacattgaattatcttgcatattgattccttttagggtttggtgttctatgtttaaa 37618109  T
Q  305 aaaaccaaaaccactaccataggatgaagcaggggttttagaa 347  Q
    |||| ||||||||||  |||||||||||| ||| |||||||||    
T  37618108 aaaatcaaaaccacttacataggatgaagaaggagttttagaa 37618066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 205 - 347
Target Start/End: Original strand, 22081760 - 22081906
Alignment:
Q  205 taatgagtctggtgttacaaaatgagcttgaa----gatgaattgggaacattgaattcacttgcattttgattccttttagggtttggtgttctatgtt 300  Q
    |||||||||| ||||||||||||||| |||||    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  22081760 taatgagtctagtgttacaaaatgagtttgaattaagatgaattgggaacattgaattatcttgcatattgattccttttagggtttggtgttctatgtt 22081859  T
Q  301 aaacaaaaccaaaaccactaccataggatgaagcaggggttttagaa 347  Q
     || |||| ||||||||||  |||||||||||| ||| |||||||||    
T  22081860 taaaaaaatcaaaaccacttacataggatgaagtaggagttttagaa 22081906  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 352
Target Start/End: Original strand, 27445112 - 27445217
Alignment:
Q  247 gaacattgaattcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttaga 346  Q
    ||||||||| ||||||||| |||||| || | |||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||   ||||||||    
T  27445112 gaacattgagttcacttgctttttgaatcttcttagagtttggtgttctatgttaaaaaaaattaaaaccactaccataggatgaagcaatagttttaga 27445211  T
Q  347 aacaaa 352  Q
    | ||||    
T  27445212 atcaaa 27445217  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 347
Target Start/End: Complemental strand, 20909882 - 20909783
Alignment:
Q  247 gaacattgaattcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttaga 346  Q
    ||||||||||||||||||| |||||| || | |||  ||||||||||||| |||| | ||||   |||||||| ||||| ||||||||| | ||||||||    
T  20909882 gaacattgaattcacttgctttttgaatcttcttatagtttggtgttctaagttaga-aaaaattaaaccactgccatatgatgaagcaagagttttaga 20909784  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 347
Target Start/End: Complemental strand, 20924330 - 20924231
Alignment:
Q  247 gaacattgaattcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttaga 346  Q
    ||||||||||||||||||| |||||| || | |||  ||||||||||||| |||| | ||||   |||||||| ||||| ||||||||| | ||||||||    
T  20924330 gaacattgaattcacttgctttttgaatcttcttatagtttggtgttctaagttaga-aaaaattaaaccactgccatatgatgaagcaagagttttaga 20924232  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 34008681 - 34008712
Alignment:
Q  1 tcgttccagccgttggattaatctatgttgct 32  Q
    ||||||||||||||||||||||||||||||||    
T  34008681 tcgttccagccgttggattaatctatgttgct 34008712  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 40163784 - 40163915
Alignment:
Q  78 ttttaattatgtgatttaagaacattatttgaatttgaatatgacgtctctg----attagagaatgaagatgctactatatatatttgatcgtaaatcc 173  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||    ||| | | ||||| |||||||||||||||||||||| |||||||    
T  40163784 ttttaattatgtgatttaagaacattgtttgaatttgaatatgacgtctatgatatattgggggatgaaaatgctactatatatatttgatcctaaatcc 40163883  T
Q  174 acatcaatgatgatgttgttcatgtaactttt 205  Q
    |||||  |||||||||||||| ||||| ||||    
T  40163884 acatctttgatgatgttgttcgtgtaaatttt 40163915  T

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Target: scaffold0003 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 42246 - 42141
Alignment:
Q  247 gaacattgaattcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttaga 346  Q
    ||||||||| ||||||||| |||||| || | |||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||   ||||||||    
T  42246 gaacattgagttcacttgctttttgaatcttcttagagtttggtgttctatgttaaaaaaaattaaaaccactaccataggatgaagcaatagttttaga 42147  T
Q  347 aacaaa 352  Q
    | ||||    
T  42146 atcaaa 42141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 35575 - 35471
Alignment:
Q  247 gaacattgaattcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttaga 346  Q
    ||||||||| ||||||||| |||||| || | |  | |||||||||||||||||||| ||||  |||||||||||||||||||||||||   ||||||||    
T  35575 gaacattgagttcacttgctttttgaatcttctatgagtttggtgttctatgttaaa-aaaattaaaaccactaccataggatgaagcaatagttttaga 35477  T
Q  347 aacaaa 352  Q
    | ||||    
T  35476 atcaaa 35471  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 347
Target Start/End: Complemental strand, 41326777 - 41326677
Alignment:
Q  247 gaacattgaattcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttaga 346  Q
    ||||||||||||||||||| |||||| || | |||  |||||||||||||||||| | ||||   |||||||| ||||| ||||||||| | ||||||||    
T  41326777 gaacattgaattcacttgctttttgaatcttcttatagtttggtgttctatgttagaaaaaaattaaaccactgccatatgatgaagcaagagttttaga 41326678  T
Q  347 a 347  Q
    |    
T  41326677 a 41326677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 43227181 - 43227279
Alignment:
Q  247 gaacattgaattcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttaga 346  Q
    ||||||||||||||||||  |||||| ||   || | |||||||||||||||||||| ||||  ||||| ||||||||||||||||||| | ||||||||    
T  43227181 gaacattgaattcacttgatttttgaatctcatt-gagtttggtgttctatgttaaa-aaaattaaaactactaccataggatgaagcaagagttttaga 43227278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 42312995 - 42312909
Alignment:
Q  249 acattgaattcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagca 335  Q
    ||||||||||||||||| |||||  || | |||  |||||||||||||||||| | ||||   |||||||| ||||| |||||||||    
T  42312995 acattgaattcacttgctttttgtatcttcttatagtttggtgttctatgttagaaaaaaattaaaccactgccatacgatgaagca 42312909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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