View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18216_high_8 (Length: 341)

Name: NF18216_high_8
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18216_high_8
NF18216_high_8
[»] chr5 (30 HSPs)
chr5 (147-332)||(2618109-2618290)
chr5 (1-146)||(42630711-42630856)
chr5 (1-146)||(8323707-8323852)
chr5 (1-146)||(791713-791867)
chr5 (25-146)||(130254-130375)
chr5 (28-146)||(26534506-26534624)
chr5 (77-144)||(8323903-8323970)
chr5 (77-146)||(26534693-26534762)
chr5 (69-146)||(33377835-33377912)
chr5 (69-146)||(5146690-5146767)
chr5 (67-146)||(35454451-35454529)
chr5 (69-147)||(13823335-13823413)
chr5 (69-143)||(35454637-35454710)
chr5 (77-146)||(791592-791661)
chr5 (85-146)||(6518203-6518264)
chr5 (69-146)||(8489123-8489200)
chr5 (69-146)||(19898941-19899018)
chr5 (74-146)||(14388512-14388583)
chr5 (77-146)||(130443-130512)
chr5 (67-148)||(5146502-5146582)
chr5 (78-146)||(14069861-14069928)
chr5 (75-143)||(19897228-19897295)
chr5 (69-147)||(228716-228794)
chr5 (77-143)||(42630902-42630968)
chr5 (69-146)||(40881792-40881867)
chr5 (69-146)||(6518390-6518466)
chr5 (78-146)||(13823150-13823217)
chr5 (69-129)||(40882006-40882066)
chr5 (85-143)||(228987-229044)
chr5 (69-131)||(27319654-27319716)
[»] scaffold0214 (2 HSPs)
scaffold0214 (1-146)||(11746-11891)
scaffold0214 (69-142)||(11630-11703)
[»] chr4 (14 HSPs)
chr4 (1-146)||(3102540-3102685)
chr4 (1-146)||(40533963-40534108)
chr4 (1-146)||(9231580-9231725)
chr4 (20-145)||(13690216-13690341)
chr4 (77-148)||(40534158-40534229)
chr4 (68-146)||(3102726-3102804)
chr4 (77-146)||(11147014-11147083)
chr4 (75-146)||(5121000-5121071)
chr4 (69-146)||(18381496-18381573)
chr4 (69-146)||(18936864-18936941)
chr4 (69-146)||(37177813-37177890)
chr4 (69-146)||(18936676-18936752)
chr4 (84-127)||(9231782-9231825)
chr4 (68-143)||(11147211-11147285)
[»] chr3 (13 HSPs)
chr3 (1-146)||(33219072-33219217)
chr3 (2-144)||(10598810-10598952)
chr3 (1-146)||(36274244-36274389)
chr3 (28-146)||(33214585-33214703)
chr3 (1-146)||(27072913-27073051)
chr3 (77-146)||(27073103-27073172)
chr3 (77-146)||(33214443-33214512)
chr3 (69-146)||(36635425-36635502)
chr3 (69-146)||(19580497-19580574)
chr3 (77-146)||(36274120-36274188)
chr3 (84-146)||(10599000-10599062)
chr3 (78-143)||(36635241-36635305)
chr3 (83-146)||(11651000-11651063)
[»] chr2 (22 HSPs)
chr2 (1-146)||(31860079-31860224)
chr2 (1-146)||(42028697-42028842)
chr2 (1-146)||(7317635-7317780)
chr2 (1-146)||(16115163-16115308)
chr2 (1-146)||(13279840-13279978)
chr2 (1-148)||(2059488-2059627)
chr2 (77-146)||(36059282-36059351)
chr2 (69-146)||(15332849-15332926)
chr2 (77-146)||(13280030-13280099)
chr2 (77-146)||(42028578-42028647)
chr2 (67-145)||(3671822-3671899)
chr2 (80-146)||(7317833-7317899)
chr2 (80-146)||(31860283-31860349)
chr2 (69-146)||(31470587-31470663)
chr2 (77-147)||(38085966-38086035)
chr2 (77-146)||(2059679-2059748)
chr2 (77-146)||(16115046-16115115)
chr2 (69-147)||(38086154-38086232)
chr2 (67-147)||(31470763-31470842)
chr2 (89-148)||(15330447-15330505)
chr2 (69-147)||(3672010-3672088)
chr2 (117-146)||(36059248-36059277)
[»] chr1 (26 HSPs)
chr1 (1-146)||(10227831-10227976)
chr1 (1-142)||(19059378-19059519)
chr1 (1-144)||(26551992-26552135)
chr1 (69-146)||(23346419-23346496)
chr1 (77-146)||(10227712-10227781)
chr1 (69-146)||(48871424-48871501)
chr1 (77-146)||(26552187-26552256)
chr1 (69-146)||(28217706-28217783)
chr1 (74-147)||(48752586-48752658)
chr1 (69-146)||(50892963-50893040)
chr1 (67-147)||(50893148-50893227)
chr1 (68-147)||(48871246-48871324)
chr1 (68-146)||(28217530-28217607)
chr1 (69-145)||(39669245-39669321)
chr1 (75-146)||(42180571-42180641)
chr1 (68-146)||(4156892-4156969)
chr1 (68-146)||(7062183-7062260)
chr1 (69-146)||(41833874-41833951)
chr1 (75-146)||(41834069-41834139)
chr1 (69-145)||(50904992-50905070)
chr1 (74-145)||(50905104-50905175)
chr1 (68-137)||(23346607-23346675)
chr1 (69-119)||(7062034-7062084)
chr1 (80-137)||(19059576-19059633)
chr1 (69-147)||(42180759-42180835)
chr1 (67-115)||(39669087-39669135)
[»] chr8 (13 HSPs)
chr8 (1-146)||(37994708-37994853)
chr8 (1-146)||(44036814-44036959)
chr8 (68-146)||(2814430-2814508)
chr8 (77-147)||(37994903-37994973)
chr8 (69-146)||(397192-397269)
chr8 (69-146)||(14193512-14193588)
chr8 (77-146)||(41539770-41539839)
chr8 (77-146)||(41539966-41540034)
chr8 (68-146)||(2814243-2814320)
chr8 (69-146)||(14193324-14193400)
chr8 (78-146)||(397007-397074)
chr8 (83-146)||(40587991-40588054)
chr8 (80-130)||(25101746-25101796)
[»] chr6 (8 HSPs)
chr6 (1-146)||(33022164-33022309)
chr6 (77-145)||(33022363-33022431)
chr6 (68-145)||(7789856-7789933)
chr6 (69-147)||(21389020-21389098)
chr6 (68-143)||(21389208-21389282)
chr6 (68-135)||(7789678-7789744)
chr6 (67-145)||(29859735-29859813)
chr6 (69-145)||(28472548-28472624)
[»] scaffold0135 (2 HSPs)
scaffold0135 (1-146)||(37446-37591)
scaffold0135 (84-127)||(37648-37691)
[»] chr7 (11 HSPs)
chr7 (8-146)||(19804797-19804935)
chr7 (69-146)||(7298635-7298712)
chr7 (69-146)||(40521203-40521280)
chr7 (67-147)||(28948991-28949070)
chr7 (75-146)||(40521016-40521086)
chr7 (68-146)||(16979604-16979681)
chr7 (77-146)||(19805609-19805678)
chr7 (74-143)||(46567960-46568028)
chr7 (78-146)||(7298833-7298900)
chr7 (69-120)||(46568145-46568196)
chr7 (67-137)||(47478370-47478436)
[»] scaffold0140 (2 HSPs)
scaffold0140 (68-146)||(15847-15925)
scaffold0140 (115-144)||(16045-16074)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 147 - 332
Target Start/End: Original strand, 2618109 - 2618290
Alignment:
Q  147 cacactcaaaatcaaaagcttagtttaaagcctctctcatttaagtttgagtccccccacaaaaataataattatcataaaaatattggtattgagacac 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  2618109 cacactcaaaatcaaaagcttagtttaaagcctctctcatttaagtttgagtccccccacaaaa----taattatcataaaaatattggtattgagacac 2618204  T
Q  247 tttcagtacatgagtgggtgcaagtgcaacctgtcacctctgcatgctcttgactttaccctctcttctctggtgttttcctttgc 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2618205 tttcagtacatgagtgggtgcaagtgcaacctgtcacctctgcatgctcttgactttaccctctcttctctggtgttttcctttgc 2618290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 42630856 - 42630711
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||    
T  42630856 ctctctctccagcaccactaattcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttagtttgttg 42630757  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  42630756 tttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8323852 - 8323707
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| |||    
T  8323852 ctctctctccaccaccactaactcgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttattg 8323753  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  8323752 tttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 791713 - 791867
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgt---------ttt 91  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||         |||    
T  791713 ctctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaataatgacgtgtcatgttttaatttgttt 791812  T
Q  92 aatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  791813 aatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 130375 - 130254
Alignment:
Q  25 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggtt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| | ||||||||    
T  130375 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggtt 130276  T
Q  125 cgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||    
T  130275 cgttcctacacaagaatttctc 130254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 26534624 - 26534506
Alignment:
Q  28 atcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgt 127  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  26534624 atcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgt 26534525  T
Q  128 tcctacacaagaatttctc 146  Q
    |||||||||||||||||||    
T  26534524 tcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 8323903 - 8323970
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8323903 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 26534693 - 26534762
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26534693 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 26534762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 33377835 - 33377912
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  33377835 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 5146690 - 5146767
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  5146690 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctc 5146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 35454529 - 35454451
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  35454529 gaaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 13823335 - 13823413
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||| |||||||||||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||    
T  13823335 aaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctcc 13823413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 35454637 - 35454710
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  35454637 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 791661 - 791592
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||    
T  791661 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 6518264 - 6518203
Alignment:
Q  85 atgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6518264 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 8489200 - 8489123
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||    
T  8489200 aaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctc 8489123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 19898941 - 19899018
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||| ||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  19898941 aaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 14388512 - 14388583
Alignment:
Q  74 aatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  14388512 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 130443 - 130512
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||    
T  130443 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 5146582 - 5146502
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 148  Q
    |||||| ||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  5146582 gaaaaaaaataacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctcca 5146502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 14069928 - 14069861
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctc 14069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 19897295 - 19897228
Alignment:
Q  75 atgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  19897295 atgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 228794 - 228716
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||| ||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||  |||||||||    
T  228794 aaaacaataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctcc 228716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 42630902 - 42630968
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    |||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||    
T  42630902 gacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 40881867 - 40881792
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||   ||||||||||||||||||||||| ||||||||    
T  40881867 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaat--aatgttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 6518390 - 6518466
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||| || |||| ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  6518390 aaaaaaatgatgtatcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctc 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 13823217 - 13823150
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||| |||||| || | |||||| ||||||||||||||||||||||||||||||    
T  13823217 acgtgtcatgttttagtttattgtttatacgaatgata-gttaggttcgttcctacacaagaatttctc 13823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 40882006 - 40882066
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttc 129  Q
    |||| ||| ||||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  40882006 aaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  85 atgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| |||||||| |||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 27319654 - 27319716
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcct 131  Q
    |||| ||||| || |||| ||||||||||||||||||||| |||||||||||| || ||||||    
T  27319654 aaaacaatgatgtttcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 11746 - 11891
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  11746 ctctctctccaccaccactagtttgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttaatttgttg 11845  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  11846 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 11703 - 11630
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatt 142  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11703 aaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 3102685 - 3102540
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||    
T  3102685 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttg 3102586  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  3102585 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 40534108 - 40533963
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||    
T  40534108 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtatcatgttttaatttgttg 40534009  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||    
T  40534008 tttgtaagaatgataggttaggttcgttcctacacaagaatttctc 40533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 9231725 - 9231580
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  9231725 ctctctctccaccaccattagtttgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttg 9231626  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||| || | ||||||||||||||||||||||||||||    
T  9231625 tttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 13690341 - 13690216
Alignment:
Q  20 agttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgtt 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||    
T  13690341 agttcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggtt 13690242  T
Q  120 aggttcgttcctacacaagaatttct 145  Q
    ||||||||||||||||||||||||||    
T  13690241 aggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 40534158 - 40534229
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 148  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40534158 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcca 40534229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 3102726 - 3102804
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3102726 aaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 11147083 - 11147014
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  11147083 gacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctc 11147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 5121000 - 5121071
Alignment:
Q  75 atgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  5121000 atgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctc 5121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 18381496 - 18381573
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||    
T  18381496 aaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctc 18381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 18936864 - 18936941
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  18936864 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctc 18936941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 37177813 - 37177890
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  37177813 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctc 37177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 18936752 - 18936676
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||    
T  18936752 aaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctc 18936676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 9231782 - 9231825
Alignment:
Q  84 catgttttaatttgttgtttgtaaggatgatatgttaggttcgt 127  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  9231782 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 11147211 - 11147285
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    ||||| |||||| |||||| ||||||||| ||||||||||| || ||| ||||| |||||| ||||| ||||||||    
T  11147211 aaaaaaaatgacatgtcatattttaatttattgtttgtaagaataata-gttagattcgtttctacataagaattt 11147285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 33219217 - 33219072
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  33219217 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaatgacgaatcatgttttaatttgttg 33219118  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  33219117 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 10598952 - 10598810
Alignment:
Q  2 tctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgt 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||    
T  10598952 tctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgt 10598853  T
Q  102 ttgtaaggatgatatgttaggttcgttcctacacaagaatttc 144  Q
    |||||| ||||||| ||||||||||||||||||||||||||||    
T  10598852 ttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 36274244 - 36274389
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  36274244 ctctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttg 36274343  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| ||||||| ||||| |||||||||||| |||||||||||    
T  36274344 tttgtaaagatgataggttagattcgttcctacataagaatttctc 36274389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 33214585 - 33214703
Alignment:
Q  28 atcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgt 127  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  33214585 atcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgt 33214684  T
Q  128 tcctacacaagaatttctc 146  Q
    |||||||||||||||||||    
T  33214685 tcctacacaagaatttctc 33214703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 27073051 - 27072913
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| ||| |||||||||||| || ||       |||||||||||||||    
T  27073051 ctctccctccaccaccactagttcgtgatcttccatcaccattcaccagcaacactattcatggtggaaaaacaacga-------tgttttaatttgttg 27072959  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  27072958 tttgtaaggatgatagattaggttcgttcctacacaagaatttctc 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 27073103 - 27073172
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27073103 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 33214512 - 33214443
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33214512 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 36635425 - 36635502
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  36635425 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 19580497 - 19580574
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  19580497 aaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctc 19580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 36274188 - 36274120
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36274188 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa-aatttctc 36274120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  84 catgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 36635305 - 36635241
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  36635305 acgtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 11651063 - 11651000
Alignment:
Q  83 tcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  11651063 tcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 31860224 - 31860079
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31860224 ctctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaataatgacgtgtcatgttttaatttgttg 31860125  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  31860124 tttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 42028697 - 42028842
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||    
T  42028697 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttg 42028796  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  42028797 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 7317780 - 7317635
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  7317780 ctctctctccaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttagtttgttg 7317681  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    || |||||||||||| ||||||||||||||||||||| | ||||||    
T  7317680 ttagtaaggatgataggttaggttcgttcctacacaaaagtttctc 7317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 16115163 - 16115308
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||    
T  16115163 ctctctctccaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatattttagtttgttg 16115262  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||| |||||| ||||||||||||||||||||| ||||||||    
T  16115263 tttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 13279978 - 13279840
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| ||| |||||||||||| || ||       |||||||||||||||    
T  13279978 ctctccctccaccaccactagttcgtgatcttccatcaccattcaccagcaacactattcatggtggaaaaacaacga-------tgttttaatttgttg 13279886  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  13279885 tttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 2059627 - 2059488
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||| || ||||||||| |||| |||||||||||||||||        |||||||| ||||| ||||||| ||||| |||||||    
T  2059627 ctctctctccaccaccactaattcgtgatcttctatcatcattcaccaccaacacc--------tggaaaaacaatgaagtgtcatattttagtttgttg 2059536  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 148  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  2059535 tttgtaaggatgataggttaggttcgttcctacccaagaatttctcca 2059488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 36059282 - 36059351
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36059282 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 36059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 15332849 - 15332926
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15332849 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 13280030 - 13280099
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13280030 gacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 13280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 42028647 - 42028578
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  42028647 gacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 3671899 - 3671822
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  3671899 gaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 7317833 - 7317899
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7317833 gtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 7317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 31860283 - 31860349
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  31860283 gtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 31860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 31470663 - 31470587
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  31470663 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 38086035 - 38085966
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  38086035 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctcc 38085966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 2059679 - 2059748
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  2059679 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctc 2059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 16115115 - 16115046
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  16115115 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 38086154 - 38086232
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||    
T  38086154 aaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctcc 38086232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 31470763 - 31470842
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||| ||||| |||||||  |||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  31470763 gaaaaaaaatgatgtgtcattatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctcc 31470842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 15330505 - 15330447
Alignment:
Q  89 tttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 148  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  15330505 tttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctcca 15330447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 3672010 - 3672088
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||| |||||||||| || |||||||||||| |||||||  ||||||| |||| ||||||||| || ||||||||||||    
T  3672010 aaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctcc 3672088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 36059277 - 36059248
Alignment:
Q  117 gttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||    
T  36059277 gttaggttcgttcctacacaagaatttctc 36059248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 10227831 - 10227976
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10227831 ctctctctccaccaccactagtttgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaataatgatgtgtcatgttttaatttgttg 10227930  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  10227931 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 10227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 19059519 - 19059378
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||||| || ||||||||||||||||||||||||    
T  19059519 ctctctctccacaaccactagttcgtgatcttccatcaccattcaccaccaccaccattcatagtggaaaaacaacgacgtgtcatgttttaatttgttg 19059420  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatt 142  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  19059419 tttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 26552135 - 26551992
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| ||| ||||||||| |||    
T  26552135 ctctctctccaccgccactagttcgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgccatattttaattttttg 26552036  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttc 144  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||    
T  26552035 tttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 23346496 - 23346419
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23346496 aaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 23346419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 10227781 - 10227712
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  10227781 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 48871424 - 48871501
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48871424 aaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 26552187 - 26552256
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  26552187 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 28217706 - 28217783
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  28217706 aaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctc 28217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 48752586 - 48752658
Alignment:
Q  74 aatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  48752586 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctcc 48752658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 50893040 - 50892963
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||    
T  50893040 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 50893148 - 50893227
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||| ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  50893148 gaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctcc 50893227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 48871324 - 48871246
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    ||||| ||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  48871324 aaaaaaaatgatgtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctcc 48871246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 28217607 - 28217530
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||||||    
T  28217607 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctc 28217530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 39669245 - 39669321
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    |||| ||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||    
T  39669245 aaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 42180641 - 42180571
Alignment:
Q  75 atgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||    
T  42180641 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaatttctc 42180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 4156969 - 4156892
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||| ||||||||||||||||||||||| || |||||||| |||||| ||||||||| ||||||||||||||||||||    
T  4156969 aaaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctc 4156892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 7062183 - 7062260
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||| ||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||    
T  7062183 aaaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctc 7062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 41833951 - 41833874
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||| |||| |||||| ||| |||||||||||||    
T  41833951 aaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 41834069 - 41834139
Alignment:
Q  75 atgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||  ||| || |||| |||||||||||||||||||||||||    
T  41834069 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctc 41834139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 50905070 - 50904992
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatg--atatgttaggttcgttcctacacaagaatttct 145  Q
    |||| |||||||||||||||||||| |||||||||||||  |||  |||| ||||||||||||||||||||||||||||    
T  50905070 aaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 50905104 - 50905175
Alignment:
Q  74 aatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||  ||||||| |||||||    
T  50905104 aatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 23346607 - 23346675
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa 137  Q
    ||||| |||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  23346607 aaaaaaaatgacatgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 7062084 - 7062034
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgtt 119  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  7062084 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgtt 7062034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 19059576 - 19059633
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa 137  Q
    ||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  19059576 gtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaa 19059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 42180759 - 42180835
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||| ||||| ||||||||||||| ||||||||||||||| ||||||| |||| |||||| | | ||||||||||||||    
T  42180759 aaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgatat-ttagattcgtttc-atacaagaatttctcc 42180835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 39669135 - 39669087
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgata 115  Q
    |||||| |||||||| |||| ||||||||| ||||||||||| ||||||    
T  39669135 gaaaaaaaatgacgtatcatattttaatttattgtttgtaagaatgata 39669087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 37994853 - 37994708
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||| |||    
T  37994853 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtatcatgttttaatttattg 37994754  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  37994753 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 44036959 - 44036814
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  44036959 ctctctctccaccaccactagttcgtgatcttccatcaccactcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgtttgaatttgttg 44036860  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||    
T  44036859 tttgtaaggatgataggttaggttcgtccctacacatgaatttctc 44036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 2814430 - 2814508
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2814430 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 37994903 - 37994973
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37994903 gacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 37994973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 397192 - 397269
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  397192 aaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctc 397269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 14193512 - 14193588
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  14193512 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 14193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 41539839 - 41539770
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41539839 gacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 41539770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 41539966 - 41540034
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  41539966 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 41540034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 2814320 - 2814243
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||| || ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  2814320 aaaaaaaacgacgtgtcatgatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 2814243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 14193400 - 14193324
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||| ||||||||||||||||||||||||||||  || |||||||||||||||||||| |||| ||||||||    
T  14193400 aaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctc 14193324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 397074 - 397007
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  397074 acgtgttatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 40587991 - 40588054
Alignment:
Q  83 tcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||| ||| |||  ||||||| |||  ||||||||||||| ||||||||||    
T  40587991 tcatgttttaatttgttatttataaaaatgatatattaaattcgttcctacaccagaatttctc 40588054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 25101796 - 25101746
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcc 130  Q
    ||||||| ||||| ||||||||||| ||| |||||| ||||||||||||||    
T  25101796 gtgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 33022309 - 33022164
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  33022309 ctctctctccaccaccactagttcatgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttg 33022210  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  33022209 tttgtaaggatgataggttaggttcgttcctacacaataatttctc 33022164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 33022363 - 33022431
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33022363 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 7789856 - 7789933
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  7789856 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 21389098 - 21389020
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  21389098 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctcc 21389020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 21389208 - 21389282
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  21389208 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 7789744 - 7789678
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacac 135  Q
    ||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  7789744 aaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 29859735 - 29859813
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    |||||| ||| |||||| ||| ||||||||||||||| |||  ||||||| ||||||||||||||||| || |||||||    
T  29859735 gaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 28472548 - 28472624
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 145  Q
    |||| ||| |||||| ||| ||||||||||||||| |||  ||||||| ||||||||||||||||| || |||||||    
T  28472548 aaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 37591 - 37446
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  37591 ctctctctccaccaccattagtttgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttg 37492  T
Q  101 tttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||| || | ||||||||||||||||||||||||||||    
T  37491 tttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 37446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 37648 - 37691
Alignment:
Q  84 catgttttaatttgttgtttgtaaggatgatatgttaggttcgt 127  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  37648 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 19804935 - 19804797
Alignment:
Q  8 tccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgtttgtaa 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| || || ||||| ||||| ||||||||||||||||    
T  19804935 tccaccaccactagttcgtgatcttccatcaccattcaccaccaacatcattcatggtggaaaaacaacgatgtgtcgtgtttcaatttgttgtttgtaa 19804836  T
Q  108 ggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  19804835 ggataataggttaggttcgttcctacacaagaatttctc 19804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 7298712 - 7298635
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7298712 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 40521203 - 40521280
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40521203 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 28948991 - 28949070
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 147  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  28948991 gaaaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctcc 28949070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 40521086 - 40521016
Alignment:
Q  75 atgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40521086 atgacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 40521016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 16979604 - 16979681
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||| |||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  16979604 aaaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctc 16979681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 19805609 - 19805678
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||    
T  19805609 gacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctc 19805678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 46568028 - 46567960
Alignment:
Q  74 aatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 143  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  46568028 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 7298833 - 7298900
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  7298833 acgtgttatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 7298900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 46568145 - 46568196
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgtta 120  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  46568145 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 47478436 - 47478370
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa 137  Q
    |||||| ||||| |||||||||   ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  47478436 gaaaaaaaatgatgtgtcatgt---aatttgttgtttgtaagaatgata-gttaagttcgtttctacacaa 47478370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 15925 - 15847
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 146  Q
    ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15925 aaaaataataacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 16045 - 16074
Alignment:
Q  115 atgttaggttcgttcctacacaagaatttc 144  Q
    ||||||||||||||||||||||||||||||    
T  16045 atgttaggttcgttcctacacaagaatttc 16074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University