View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18216_low_1 (Length: 667)
Name: NF18216_low_1
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18216_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 403
Target Start/End: Complemental strand, 6085682 - 6085282
Alignment:
| Q |
9 |
agcagagagaaaaataaaggaagatatatctggagttgaaattcaagtggtgccccctgattcatttgttactgctgatttcaggtccaagagagttcga |
108 |
Q |
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| T |
6085682 |
agcagagagaaaaataaaggaagatatatctggagttgaaattcaagtggtgccccctgattcatttgttactgctgatttcaggttcaagagagttcga |
6085583 |
T |
|
| Q |
109 |
ttgtatgttgatgaatctaataaggttattaggactccaacaattggttgattcatcaactgaatattgttgacatggaatttgggtataaagctagtga |
208 |
Q |
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| T |
6085582 |
ttgtatgttgatgaatctaataaggtcattaggactccaataattggttgattcatcaactaaatattgttcacataagatttgggtataaagctagtga |
6085483 |
T |
|
| Q |
209 |
tgtaatttgaagaataaactagggtatggtccccagattttctgtatgatacatatataaataattattacaaaaatgatacaactatgattatagcaca |
308 |
Q |
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| T |
6085482 |
tgtaatttgaagaataaactagggtattgtccccagattttctttatgatacatatataaataattattacaaaaatgatacaaatatgattatagcaca |
6085383 |
T |
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| Q |
309 |
agacgcgtcaagaatagaaaacaatcaa------tgacgaatttgaaccttctctactttgccgcaatcggaactattaattgtcgccatttctgattgc |
402 |
Q |
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| T |
6085382 |
agacgcgtcaagaatagaaaacaatcaaagttgttgccgaatttgaaccttctctactttgctgcattatgaactattaattgttgccacttctgattgc |
6085283 |
T |
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| Q |
403 |
a |
403 |
Q |
| |
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| |
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| T |
6085282 |
a |
6085282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 402 - 651
Target Start/End: Complemental strand, 6085252 - 6085003
Alignment:
| Q |
402 |
caaaatattcttactagatcgttagagtgtttgcggatacaccatcttctttttggaaaagaaggaaactactaattatagtgacacccagaagtgacga |
501 |
Q |
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| T |
6085252 |
caaaatattcttactagatcgtcagagtgtttgcgagtacaccatctcctttttggaaaagaaggaaactacgaatcatagtaacacctagaactaacga |
6085153 |
T |
|
| Q |
502 |
atcaattaccaacccacgtttttctattctcatgtaaagcattttagctgcataatattattcattaaagttaggtttcaagcagtagaacaaaaatgat |
601 |
Q |
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| T |
6085152 |
atcaattaccaacccacgtttttctattctcatgtaaagcattttagctgcataatattattcattaaagttaggtttcaagcagtagaacaaaaatgat |
6085053 |
T |
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| Q |
602 |
gatacagagtgcaaaaccatgcttttgaagttcatataggactaatttat |
651 |
Q |
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| T |
6085052 |
gatacagagtgcaaaaccatgcttttgaagttcatatagaactaatttat |
6085003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 6070606 - 6070389
Alignment:
| Q |
9 |
agcagagagaaaaataaaggaagatatatctggagttgaaattcaagtggtgccccctgattcatttgttactgctgatttcaggtccaagagagttcga |
108 |
Q |
| |
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||||||||| |||||||||||||| || |||||||||||||| ||||||||| |||| | |||||||||||||||| | || | ||||||||| |
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| T |
6070606 |
agcagagaggaaaataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcga |
6070507 |
T |
|
| Q |
109 |
ttgtatgttgatgaatctaataaggttattaggactccaacaattggttgattcatcaactgaatattgttgacatggaatttgggtataaagctagtga |
208 |
Q |
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|||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||| | ||| |||| ||||||| ||||||| |
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| T |
6070506 |
ttgtatgttgatcaatctaataagctcattaagactccaacaattggttgattcatcaactaaatattgttcaaatgagatttcggtataatgctagtgg |
6070407 |
T |
|
| Q |
209 |
tgtaatttgaagaataaa |
226 |
Q |
| |
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| T |
6070406 |
tgaaatttaaagaataaa |
6070389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 6055874 - 6056015
Alignment:
| Q |
86 |
atttcaggtccaagagagttcgattgtatgttgatgaatctaataaggttattaggactccaacaattggttgattcatcaactgaata-ttgttgacat |
184 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||| |||| ||||| | || |
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| T |
6055874 |
atttcaggttcaagagagttcgattgtatgttgatcaatctaataagctcattaagactccaacaattggttgattcatcaactaaatatttgttcaaat |
6055973 |
T |
|
| Q |
185 |
ggaatttgggtataaagctagtgatgtaatttgaagaataaa |
226 |
Q |
| |
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| T |
6055974 |
gagatttgggtataatgctagtggtgaaatttaaagaataaa |
6056015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 6035535 - 6035657
Alignment:
| Q |
9 |
agcagagagaaaaataaaggaagatatatctggagttgaaattcaagtggtgccccctgattcatttgttactgctgatttcaggtccaagagagttcga |
108 |
Q |
| |
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|||| ||||||||||||||||||| || |||| ||| |||| |||||||| |||||| ||||| |||||| |||||| |||| | | ||||||||| |
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| T |
6035535 |
agcaaagagaaaaataaaggaagagatgtctgaggttaaaatagaagtggtgtcccctggttcatgtgttacctttgatttgaggtacgatagagttcga |
6035634 |
T |
|
| Q |
109 |
ttgtatgttgatgaatctaataa |
131 |
Q |
| |
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|||||||||||||||| |||||| |
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| T |
6035635 |
ttgtatgttgatgaatttaataa |
6035657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 6055812 - 6055870
Alignment:
| Q |
9 |
agcagagagaaaaataaaggaagatatatctggagttgaaattcaagtggtgccccctg |
67 |
Q |
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||||||||| |||||||||||||| || |||||||||||||| ||||||||| |||| |
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| T |
6055812 |
agcagagaggaaaataaaggaagagatgcatggagttgaaattcgagtggtgccacctg |
6055870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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