View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18216_low_10 (Length: 336)
Name: NF18216_low_10
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18216_low_10 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 36525274 - 36524964
Alignment:
| Q |
10 |
agatgaatacaacattaatgatagtcccattgagcaagtgaggttaacagttccaatcactgatgacccttctcagccagcactaacattcaggacatgg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36525274 |
agatgaatacaacattaatgatagtcccattgagcaagtgaggttaacagttccaatcactgatgacccttctcagccagcactaacattcaggacatgg |
36525175 |
T |
|
| Q |
110 |
attctaggcttagcttcatgtgtgctccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagctcagatca |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36525174 |
attctaggcttagcttcatgtgtgctccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagctcagatca |
36525075 |
T |
|
| Q |
210 |
tcacactcccacttgggaagcttatggctgcaacacttcccacaaaaccaattcaaatccctttcacaacctgttctttttctttgaatccggggccatt |
309 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36525074 |
tcacactcccacttggaaggcttatggctgcaacacttcccacaaaaccaattcaaatccctttcacaacctgttatttttctttgaatccggggccatt |
36524975 |
T |
|
| Q |
310 |
ctctttgaaag |
320 |
Q |
| |
|
||||||||||| |
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|
| T |
36524974 |
ctctttgaaag |
36524964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 36532106 - 36531797
Alignment:
| Q |
11 |
gatgaatacaacattaatgatagtcccattgagcaagtgaggttaacagttccaatcactgatgacccttctcagccagcactaacattcaggacatgga |
110 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
36532106 |
gatgaatatagcattaatgatagtcctattgagcaagtgaggctaacagttccgatcaccgatgacccttctcagccagcgctaacattccggacatggg |
36532007 |
T |
|
| Q |
111 |
ttctaggcttagcttcatgtgtgctccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagctcagatcat |
210 |
Q |
| |
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||||||| ||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||||||| || |
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|
| T |
36532006 |
ttctagggttagcatcatgtattctccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggctcagattat |
36531907 |
T |
|
| Q |
211 |
cacactcccacttgggaagcttatggctgcaacacttcccacaaaaccaattcaaatccctttcacaacctgttctttttctttgaatccggggccattc |
310 |
Q |
| |
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| || ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||| || |||||||| ||||| |||||||||||| |
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| T |
36531906 |
tgccctgccacttgggaaacttatggctgcaacacttcccacaaaaccaattcaagtaccttttacaacatggtctttttcgttgaacccggggccattc |
36531807 |
T |
|
| Q |
311 |
tctttgaaag |
320 |
Q |
| |
|
|||||||||| |
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|
| T |
36531806 |
tctttgaaag |
36531797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 10 - 318
Target Start/End: Complemental strand, 36537719 - 36537411
Alignment:
| Q |
10 |
agatgaatacaacattaatgatagtcccattgagcaagtgaggttaacagttccaatcactgatgacccttctcagccagcactaacattcaggacatgg |
109 |
Q |
| |
|
||||||||| | |||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| |
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|
| T |
36537719 |
agatgaatatagcattgatgattctcctattgagcaagtgaggctaacagttccaatcactgatgacccttcacagccagcacttactttccggacatgg |
36537620 |
T |
|
| Q |
110 |
attctaggcttagcttcatgtgtgctccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagctcagatca |
209 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||||| || ||||| |||| |||||||||||||| |||||||||||| ||||||||||| | |
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|
| T |
36537619 |
gttctagggttagcatcatgtgtgctccttgcatttatgaaccaatttttaggatacaaaaccaaccctttgaaaatcacttctgtctcagctcagatta |
36537520 |
T |
|
| Q |
210 |
tcacactcccacttgggaagcttatggctgcaacacttcccacaaaaccaattcaaatccctttcacaacctgttctttttctttgaatccggggccatt |
309 |
Q |
| |
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| || |||||||||||||| |||||||||||||||||||||| |||| |||||||| |||||||||||| | ||||||| |||||||| ||| |||| |
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|
| T |
36537519 |
ttaccctcccacttgggaaacttatggctgcaacacttcccataaaaacaattcaagtccctttcacaagtttgactttttcgttgaatccagggtcatt |
36537420 |
T |
|
| Q |
310 |
ctctttgaa |
318 |
Q |
| |
|
|||| |||| |
|
|
| T |
36537419 |
ctctgtgaa |
36537411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 42055849 - 42055968
Alignment:
| Q |
135 |
tccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagctcagatcatcacactcccacttgggaagcttat |
234 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||||||||||||| ||| |||||| |||| ||||| ||||| | | |||||| |||| || || || |
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|
| T |
42055849 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccaattggaaaactaat |
42055948 |
T |
|
| Q |
235 |
ggctgcaacacttcccacaa |
254 |
Q |
| |
|
||||||||||||||| |||| |
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|
| T |
42055949 |
ggctgcaacacttccaacaa |
42055968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 42080999 - 42081118
Alignment:
| Q |
135 |
tccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagctcagatcatcacactcccacttgggaagcttat |
234 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||||||||||||| ||| |||||| |||| ||||| ||||| | | |||||| |||| || || || |
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| T |
42080999 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccaattggaaaactaat |
42081098 |
T |
|
| Q |
235 |
ggctgcaacacttcccacaa |
254 |
Q |
| |
|
||||||||||||||| |||| |
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|
| T |
42081099 |
ggctgcaacacttccaacaa |
42081118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 42072052 - 42072170
Alignment:
| Q |
136 |
ccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagctcagatcatcacactcccacttgggaagcttatg |
235 |
Q |
| |
|
|||||| ||||||||||| ||||| || | ||||||||||||| || || |||||||| ||||| ||||| || | |||||| |||| || || ||| |
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|
| T |
42072052 |
ccttgcctttgtgaaccaattctttggattcagaaccaaccctctgtctattacttctgtctcagcacagattattgctctcccagttggaaaactaatg |
42072151 |
T |
|
| Q |
236 |
gctgcaacacttcccacaa |
254 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
42072152 |
gctgcaacacttccaacaa |
42072170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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