View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18216_low_12 (Length: 283)
Name: NF18216_low_12
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18216_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 44348203 - 44347937
Alignment:
| Q |
1 |
tttcatatcatacctaatttgtttggtacttttgggtgaattttgagcaggtaacctttccattttttgtattgcatggagaaacagatacagtgacaga |
100 |
Q |
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| T |
44348203 |
tttcatatcatacctaatttgtttggtacttttgggtgaattttgagcaggtaacctttccattttttgtattgcatggagaaacagatacagtgacaga |
44348104 |
T |
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| Q |
101 |
cccagaagtaagcagggcattatatgagagagctagtagcaaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcct |
200 |
Q |
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| T |
44348103 |
cccagaagtaagcagggcattatatgagagagctagtagcaaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcct |
44348004 |
T |
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| Q |
201 |
gatgacaacattgaaaaagtttttgaagacatcatcacgtggcttgacaagcacgccaacaatgatg |
267 |
Q |
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| T |
44348003 |
gatgacaacattgaaaaagtttttgaagacatcatcacatggcttgacaagcacgccaacaatgatg |
44347937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 39562493 - 39562662
Alignment:
| Q |
36 |
gtgaattttgagcaggtaacctttccattttttgtattgcatggagaaacagatacagtgacagacccagaagtaagcagggcattatatgagagagcta |
135 |
Q |
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||||||||||||||||| || || || || || || || |||||||| ||||| |||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
39562493 |
gtgaattttgagcaggtgacgttgcctttcttagtgttacatggagaggaagataaagtgacagacccggaagtaagcaaggcattatatgagagagcta |
39562592 |
T |
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| Q |
136 |
gtagcaaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatga |
205 |
Q |
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| T |
39562593 |
gtagtgtagacaagaccataaaattgtaccctggaatgtggcatggcttaacagctggggagcctgatga |
39562662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 52216378 - 52216331
Alignment:
| Q |
138 |
agcaaagataagacaattaaattgtaccctggaatgtggcatggttta |
185 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
52216378 |
agcaaagataagacactgaaattgtaccctggaatgtggcatggttta |
52216331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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