View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18216_low_23 (Length: 204)
Name: NF18216_low_23
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18216_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 54714434 - 54714272
Alignment:
| Q |
24 |
gctgatcagcttcaatatctttcaccggttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgatt |
123 |
Q |
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| T |
54714434 |
gctgatcagcttcaatatctttcaccggttgattaactcttccatcacccccggcagcagcactattcagaataccagcttcatctttcaccagttgatt |
54714335 |
T |
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| Q |
124 |
agctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggac |
186 |
Q |
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| T |
54714334 |
agctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggac |
54714272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 54721335 - 54721201
Alignment:
| Q |
52 |
ttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgattagctcttccttcaccttcagcagcagca |
151 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||| |
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| T |
54721335 |
ttgattaactcttccatcaccctcagcagcagcactattcagagtaccaacttcatctttcaccagttgattagctcttacttcaccctcagcagaagca |
54721236 |
T |
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| Q |
152 |
ctatagccattgagaaataatgccacagcaaggac |
186 |
Q |
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| T |
54721235 |
ctatagccattcagaattaatgccacagcaaggac |
54721201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 54721357 - 54721298
Alignment:
| Q |
99 |
cagcttcatctttcaccag---ttgattagctcttccttcaccttcagcagcagcactat |
155 |
Q |
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| T |
54721357 |
cagcttcatctttcactagtaattgattaactcttccatcaccctcagcagcagcactat |
54721298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 5297488 - 5297354
Alignment:
| Q |
52 |
ttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgattagctcttccttcaccttcagcagcagca |
151 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||| |
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| T |
5297488 |
ttgattaactcttccatcaccctcagcagcagcactattcagagtaccagattcatctttcaccagttgattagctcttacttcaccctcagcagaagca |
5297389 |
T |
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| Q |
152 |
ctatagccattgagaaataatgccacagcaaggac |
186 |
Q |
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| T |
5297388 |
ctatagccattcagaattaatgccacagcaaggac |
5297354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 5302868 - 5302785
Alignment:
| Q |
100 |
agcttcatctttcaccagttgattagctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggac |
186 |
Q |
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| T |
5302868 |
agcttcatctttctccagttgattatctcttcccacacc--ca-cagcagcactatagccattcacaaataatgccacaacaaggac |
5302785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 5297510 - 5297451
Alignment:
| Q |
99 |
cagcttcatctttcaccag---ttgattagctcttccttcaccttcagcagcagcactat |
155 |
Q |
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| T |
5297510 |
cagcttcatctttcactagtaattgattaactcttccatcaccctcagcagcagcactat |
5297451 |
T |
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