View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18216_low_3 (Length: 516)
Name: NF18216_low_3
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18216_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Complemental strand, 9471788 - 9471306
Alignment:
| Q |
17 |
aggagaaataatgtttgtgagaagaaacaagcggatccggttcatcgacccatcactaggtgaggaattgatgatttaagtttctggtttggttcataga |
116 |
Q |
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| T |
9471788 |
aggagaaataatgtttgtgagaagaaacaagcggatccggttcatcgacccatcactaggtgaggaattgatgatttaagtttctggtttggttcataga |
9471689 |
T |
|
| Q |
117 |
ccctttagtgtgaattgaatttctggattggttgaccataagaaaacacaaagatactgagacaagtgtttgaattttgcaattttaataaccaaaacag |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9471688 |
ccctttagtgtgatttgaatttctggattggttgaccataagaaaacacaaagatactgagacaagtgtttgaattttgcaattttaaaaaccaaaacag |
9471589 |
T |
|
| Q |
217 |
aaattatgtagcattgacaattcagattattggaatgtttagtgttcgacagaagtccgacgccacattatcagatgtggttaaattcaattattgttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9471588 |
aaattatgtagcattgacaattcagattattggaatgtttagtgttcgacagaagtccgacgccacattatcagatgtggttaaattcaattattgttat |
9471489 |
T |
|
| Q |
317 |
tttcttaaatgaatttgtcatcggtgtctacatctacatgccacggtgtctctgtcgtgtcaggtgtctgtgttgtagatccgaaataatggaatttttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
9471488 |
tttcttaaatgaatttgtcatcggtgtctacatctacatgccacggtgtctctgtcgtgtcaggtgtctgcgttatagatccgaaataatggaatttttc |
9471389 |
T |
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| Q |
417 |
atcttattaccatgcaagttttgttaaaatgatgatggacttatcttgctttactgttatattaggaggtttgctgcaaagat |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9471388 |
atcttattaccatgcaagttttgttaaaatgatgatggacttatcttgctttactgttatattaggaggtttgctgcaaagat |
9471306 |
T |
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