View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18216_low_4 (Length: 504)
Name: NF18216_low_4
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18216_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 13 - 488
Target Start/End: Complemental strand, 3387982 - 3387507
Alignment:
| Q |
13 |
catagatttcttaatctccaaaatcaatttctcctgaattatctcaaggaagcagcctgtttctttcccccaaaaattaatgggggaggagtgaccattt |
112 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3387982 |
catagatttcttaatctccaaaatcaatttctccttaattatctcaaggaagcagcctgtttctttcccccaaaaattaatgggggaggagtgaccattt |
3387883 |
T |
|
| Q |
113 |
cggtggatttgaattaacgttacccccatttaaccaaattaaaatcaacaaaaaactataagaatatggccacacatacataatcccacaaaatagttga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3387882 |
cggtggatttgaattaacgttacccccatttaaccaaattaaaatcaacaaaaaactataagaatatggccacacatacataatcccacaaaatagttga |
3387783 |
T |
|
| Q |
213 |
ggcggttccaaacatgacggccagaaaatcgaacatttttacccnnnnnnnactttggttttctccctttaaattcctaagtattttcttggatgcacca |
312 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3387782 |
ggcggttccaaacatgacggccagaaaatcaaacatttgtaccctttttgtactttggttttctccctttaaattcctaagtattttcttggatgcacca |
3387683 |
T |
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| Q |
313 |
tacccctaatttgaattgtaaaattaaaataatgaaaccccatttgctccaaaatttactcaaaatgataactatataacaacaactttcaaaccaaaac |
412 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3387682 |
tacccctaatttgaagtgtaaaattaaaataatgaaaccccatttgctccaaaatttactcaaaatgataactatataacaacaactttcaaaccaaaac |
3387583 |
T |
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| Q |
413 |
acaattaagaaacaaagttttcaattaagataggaagcttatagaagaagccatgcaacgtttctaccgcaaaatt |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3387582 |
acaattaagaaacaaagttttcaattaagataggaagcttatagaagaagccatgcaacatttctaccgcaaaatt |
3387507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 488
Target Start/End: Complemental strand, 3394064 - 3394023
Alignment:
| Q |
447 |
aagcttatagaagaagccatgcaacgtttctaccgcaaaatt |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3394064 |
aagcttatagaagaagccatgcaacgtttctaccgcaaaatt |
3394023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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