View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18216_low_5 (Length: 428)

Name: NF18216_low_5
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18216_low_5
NF18216_low_5
[»] chr6 (1 HSPs)
chr6 (19-324)||(7702292-7702587)


Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 7702292 - 7702587
Alignment:
Q  19 caagttttccccaatttgtaagctaagcaacattgaattgaatcaaatgaatatggctattgacaacaaactgtgcaaagcgcaaaccaacaaacctgaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7702292 caagttttccccaatttgtaagctaagcaacattgaattgaatcaaatgaatatggctattgacaacaaactgtgcaaagtgcaaaccaacaaacctgaa 7702391  T
Q  119 gggaatcaattcaagggatgatgcgacaagaagagaaga-gtgtcgccgccgtaaccttcgccgtcgccggagttagggatgcaaggtcaccggagaatg 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7702392 gggaatcaattcaagggatgatgcgacaagaagagaagaggtgtcgccgccgtaaccttcgccttcgccggagttagggatgcaaggtcaccggagaatg 7702491  T
Q  218 agagagcgagggaccgaataagagcagagcaggaagaggaagaggtaagcaggagggggtgttagagtagagagtaagtatgaaggatatttgaatgcta 317  Q
    ||||||||||||||||||||||||||||||      |||||||||||||| |||||||||||     |||||||||||||||||||||||||||||||||    
T  7702492 agagagcgagggaccgaataagagcagagc------aggaagaggtaagcgggagggggtgt-----tagagagtaagtatgaaggatatttgaatgcta 7702580  T

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