View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18216_low_8 (Length: 346)
Name: NF18216_low_8
Description: NF18216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18216_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 34256198 - 34256512
Alignment:
| Q |
19 |
aataaagatatagaattttaatgagtgaaaactgaattcattgattgaatgaaaaagaatgcactcaagtgtctatatacctgattcaaaataagtatca |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34256198 |
aataaagatatagaattttaatgagagaaaactgaattcattgattgaatgaaaaagaatgcactcaagtgtctatatacctgattcaaaataagtatca |
34256297 |
T |
|
| Q |
119 |
taatagaatacaactaactttggtaactgaacacagccgattaattcactgtggtaactgaatttattaaagttccaaaaccggtttgctactttgtgta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34256298 |
taatagaatacaactaactttggtaactgaacacagccgattaattcattgtggtaactgaatttattaaagttccaaaaccggtttgctactttgtgta |
34256397 |
T |
|
| Q |
219 |
tttatgatctgaccggtttgctac--tgtgtatttatgatctgaattgtggacatgaattcactttagtaactcaatgatttgttggaagagtttaaagg |
316 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34256398 |
tttatgatctgaccggtttgctactttgtgtatttatgatctgaattgtggacatgaattcactttagtaactcaatgatttgttggaagagtttaaagg |
34256497 |
T |
|
| Q |
317 |
gatttggattctgtg |
331 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34256498 |
gatttggattctgtg |
34256512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 41552905 - 41553029
Alignment:
| Q |
100 |
tgattcaaaataagtatcataatagaatacaactaactttggtaactgaacacagccgattaattcactgtggtaactgaatttattaaagttccaaaac |
199 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| ||||||||||||| | ||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
41552905 |
tgattcaaaataactatcataactgaatacaactaactttagtaactgaacacaactgatcaattcactgcggtaactgaatttactaaagttccaaaac |
41553004 |
T |
|
| Q |
200 |
cg-gtttgctactttgtgtatttat |
223 |
Q |
| |
|
|| ||||||||||| ||||||||| |
|
|
| T |
41553005 |
cgcttttgctactttatgtatttat |
41553029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 41553039 - 41553105
Alignment:
| Q |
263 |
tgtggacatgaattcactttagtaactcaatgatttgttggaagagtttaaagggatttggattctgtg |
331 |
Q |
| |
|
||||||||||| || ||||||||||| |||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
41553039 |
tgtggacatgagtttactttagtaacg--atgattatttggatgagtttaaagggatttggattgtgtg |
41553105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University