View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18217_high_10 (Length: 234)
Name: NF18217_high_10
Description: NF18217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18217_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 28832290 - 28832510
Alignment:
| Q |
14 |
ttgtggacatagaaacaaaatattacgcgacagaaatctatattaaaagtgaaatatacagcctttcatacaacaagaaaaaggaaattagtgaaggggg |
113 |
Q |
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| T |
28832290 |
ttgtggacatagaaacaaaataatacgcgacagaaatctatattaaaagtgaaatatacagcctttcatacaacaagaaaaaggaaattagtgaaggggg |
28832389 |
T |
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| Q |
114 |
gtgcattagcttctataataatgaatgttgaacttttgtgaagatatcaaatttgtcatgtgcttgtgactttatctattttcctttctgaatgcatagg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28832390 |
gtgcattagcttctataataatgaatgttgaacttttgtgaagatatcaaatttgtcatgtgcttgtgactttatctattttcctttctgaatgcatagg |
28832489 |
T |
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| Q |
214 |
ctttctttaattgaaattgtc |
234 |
Q |
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||||||||||||||||||||| |
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| T |
28832490 |
ctttctttaattgaaattgtc |
28832510 |
T |
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