View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18217_high_3 (Length: 434)
Name: NF18217_high_3
Description: NF18217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18217_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 43083540 - 43083136
Alignment:
| Q |
11 |
cacagattggaccccataattgtatagattctttgaaatcgtagaaaaaacatgaaagatgataagaagtgtcctaagaacactagttacnnnnnnnnnn |
110 |
Q |
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| T |
43083540 |
cacaaattggaccccacaattgtatagattctttgaaatcctagaaaaaatatgaatgatgataagaagtgtgctaagaacactagttacaaaaaaccaa |
43083441 |
T |
|
| Q |
111 |
nnntatatagtatatatactaagttttattatcaattaacgtgactaatctctatnnnnnnnnccgttacacacaagatgagtttttccttctctgaatt |
210 |
Q |
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| T |
43083440 |
aaatatatagtatatatactaagttttattatcaattaacgtgactaatctctataaaaaaacctgttacacacaagatgagtttttccttctctgaatt |
43083341 |
T |
|
| Q |
211 |
ttctcaattcaaaagagcaagagatcgagctcttaaccatttcctgaagtgacaccttctctgaatacactatttttatacacatcacatccatatttta |
310 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43083340 |
ttctcaattcaaaagagcaagagattgagctcttaaccatttcctgaagtgacaccttctctgaatacactatttttatacacatcacatccatatttta |
43083241 |
T |
|
| Q |
311 |
ttaatgaatatcctaaagatattattagcagtttcctttgtataaaacgttctgagtgtgtttggtgaagtagttttgattaaggcgcaagtggcttctt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43083240 |
ttaatgaatatcctaaagatattattagcagtttcctttgtataaaacgttctgagtgtgtttggtgaagtagttttgattaaggcgcaagtggcttctt |
43083141 |
T |
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| Q |
411 |
cgata |
415 |
Q |
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|||| |
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| T |
43083140 |
ggata |
43083136 |
T |
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