View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18217_high_6 (Length: 302)
Name: NF18217_high_6
Description: NF18217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18217_high_6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 302
Target Start/End: Complemental strand, 28832823 - 28832522
Alignment:
| Q |
5 |
ggtatattattctaaatatcaataacttgaaaggaacgtacatggtaccaaaattattaacctgaaatacacaataaatatgacaataaactttttatgg |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28832823 |
ggtacattattctaaatatcaataacttgaaaggaacgtacatggtaccaaaattattaacctgaaatacacaataaatatgacaataaactttttatgg |
28832724 |
T |
|
| Q |
105 |
aaaagtgataacatagtacacgcaaccatggatggagggggcatgctaaaaacaataatgaattcaaaacattcatatctatccataactttgaannnnn |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
28832723 |
aaaagtgataacatagtacacgcaaccatggatggagggggcatgctaaaaacaataatgaattcaaaatatccatatctatccataactttgaattttt |
28832624 |
T |
|
| Q |
205 |
nnatgaatgtggatatggacaaactcttaggttcaaagaatgc----ataaaatcaaagcttggtgatctcaaatttaattagttaggccttactggaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28832623 |
ttatgaatgtggatatggacaaactcttaggttcaaagaatgcatatataaaatcaaagcttggtgatctcaaatttaattagttaggccttactagaaa |
28832524 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
|
|
| T |
28832523 |
tt |
28832522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University