View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18217_low_1 (Length: 593)
Name: NF18217_low_1
Description: NF18217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18217_low_1 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 593
Target Start/End: Complemental strand, 34788723 - 34788148
Alignment:
| Q |
18 |
atctccagcatcaagttcttcataaagtgcataattaatcctaagatacacgcagaaaataataaataccactagaaaatgcaaaatcactaaatgataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34788723 |
atctccagcatcaagttcttcataaagtgcataattaatcctaagatacacgcagaaaataataaataccactagaaaatgaaaaatcactaaatgataa |
34788624 |
T |
|
| Q |
118 |
ataaacaaaccgacaacaaaacagcattcaaatcaaacgtaccacaaataaatatagcgctgccagtatcgcttctcctcagctggaggaacattagcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
34788623 |
ataaacaaaccgacaacaaaacagcattcaaatcaaacgtaccacaaataaatatagcgctgccagtatcgcttctcctcagctagaggtacattagcta |
34788524 |
T |
|
| Q |
218 |
tagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataattcaatggatttttcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34788523 |
tagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacaaatcataattcaatggatttttcat |
34788424 |
T |
|
| Q |
318 |
aacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccattctgtttctcaaatgctacaaacttccgatac |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
34788423 |
aacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccatactgtttctcaaatgctgcaaacttccgatac |
34788324 |
T |
|
| Q |
418 |
aaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaactccgcaaacg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34788323 |
aaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctacctccttacacctttcctcaaactccgcaaacg |
34788224 |
T |
|
| Q |
518 |
ccacaaaaagcagctctgcttcctcatcatccgctagctccaccgctctttcataaacaatcctcgcctcaggaac |
593 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34788223 |
ccacaaaaagcagctctgcttcctcatcatccgctagctccaccgctctttcataaacaatcctcgccttaggaac |
34788148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 593
Target Start/End: Original strand, 2292471 - 2293049
Alignment:
| Q |
19 |
tctccagcatcaagttcttcataaagtgcataattaatcctaagatacacgcaga-aaataataaataccactagaaaatgcaaaatcactaaatgataa |
117 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||| || || |||| |||||||||||||||| | |||||||||||||| ||||| |||| |
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| T |
2292471 |
tctccagcatcgagttcttcatagagtgcataattaatcctaagttatacacagacaaataataaataccacaaaaaaatgcaaaatcaataaataataa |
2292570 |
T |
|
| Q |
118 |
ataaacaaaccgacaacaaaacagcattcaaatcaaacgtaccacaaataaatatagcgctgccagtatcgcttctcctcagctggaggaacattagcta |
217 |
Q |
| |
|
|||||||||| || |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
2292571 |
ataaacaaacagataacaaaacagaattcaaatcaaacataccacaaataaatatagcgctgccagtatcgcttctcctcagcaggaggaacattggcta |
2292670 |
T |
|
| Q |
218 |
tagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataattcaatggatttttcat |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |
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| T |
2292671 |
tagctctctcataaacctccctagttctttccttattcccaacactctcttccaatcttatataatcaaaccatgaatcataattcaacggatttttcct |
2292770 |
T |
|
| Q |
318 |
aacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccattctgtttctcaaatgctacaaacttccgatac |
417 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
2292771 |
cacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccatactgtttctcaaatgccacaaacttccgatac |
2292870 |
T |
|
| Q |
418 |
aaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaactccgcaaacg |
517 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| | |
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| T |
2292871 |
aaatcctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcccgctcagcctccttacacctttcctcaaactccgcaaaag |
2292970 |
T |
|
| Q |
518 |
ccacaaaaagcagctctgcttcctcatcatccgctag---ctccaccgctctttcataaacaatcctcgcctcaggaac |
593 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||| |
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| T |
2292971 |
ccacaaaaagcagctcagcttcctcatcatccgcaagcttctccaccgctctttcataaacattcctcgccttaggaac |
2293049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 2597622 - 2598110
Alignment:
| Q |
18 |
atctccagcatcaagttcttcataaagtgcataattaatcctaagatacacgcaga-aaataataaataccactagaaaatgcaaaatcactaaatgata |
116 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| |||||| ||| ||||| || |||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
2597622 |
atctccaacattaagttcttcataaagtgcataactaatccaaagttacacatggacaaataataaataccacaagaaaatgcaaaatcactaaataata |
2597721 |
T |
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| Q |
117 |
aataaacaaaccgacaacaaaacagcattcaaatcaaacgtaccacaaataaatatagcgctgccagtatcgcttctcctcagctggaggaacattagct |
216 |
Q |
| |
|
||||||||||| | | ||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||| ||||| || ||| |||||||||||||| |
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| T |
2597722 |
aataaacaaacagctaccaaaacaaaattcaaatcaaacataccacagataaatatagtgctgccagtatcgattctcatcggctagaggaacattagct |
2597821 |
T |
|
| Q |
217 |
atagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataattcaatggatttttca |
316 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
2597822 |
atagctctctcataaacctccatagttctttccttattcccgacactctctttccatcttatataatcaaacca-taatcataattcaacagatttttcc |
2597920 |
T |
|
| Q |
317 |
taacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccattctgtttctcaaatgctacaaacttccgata |
416 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||| |
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| T |
2597921 |
tcacttcatcttcatattgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccatactgtttctcaaatgccacaaatttcccata |
2598020 |
T |
|
| Q |
417 |
caaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaa |
506 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||| || |||||||||||||||| |||||| | ||||||| |||||||||||| |||| |
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| T |
2598021 |
caaatcctcagccctccccttcggaatataatcaattggaaatttataaatacacatcgcacactctgcctcattacacctttccacaaa |
2598110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 201 - 313
Target Start/End: Original strand, 49276428 - 49276540
Alignment:
| Q |
201 |
tggaggaacattagctatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataa |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||| |||||||| |||||||| |
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|
| T |
49276428 |
tggaggaacattagatatagctctctcataaacctccctagttttttccttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatag |
49276527 |
T |
|
| Q |
301 |
ttcaatggatttt |
313 |
Q |
| |
|
|| || ||||||| |
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| T |
49276528 |
ttgaaaggatttt |
49276540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 49279985 - 49280065
Alignment:
| Q |
201 |
tggaggaacattagctatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatata |
281 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||| || ||| ||||| |||||||||| |||||| |
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|
| T |
49279985 |
tggaggaacattagatatagctctctcataaacctccctagttttttcctcatcccccacactttcttccaatcgtatata |
49280065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 196 - 373
Target Start/End: Complemental strand, 24602253 - 24602074
Alignment:
| Q |
196 |
tcagctggaggaacattagctatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatata----atcaaaccac |
291 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||| | ||| |||||||||||| |||||||| |||||| ||||||| ||||||||| |
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|
| T |
24602253 |
tcagccggaggaacattagctacagctctctcataaacctccttggttgtttccttattcctgacactct--tccaatattatatatataatcaaaccaa |
24602156 |
T |
|
| Q |
292 |
gaatcataattcaatggatttttcataacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatccctt |
373 |
Q |
| |
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|||||||||||||| ||||| || | ||||||||| ||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
24602155 |
gaatcataattcaagcgatttatcctcgcttcatctttggactgaaaccttctcttcccaacaatagcatctttaatccctt |
24602074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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