View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18217_low_10 (Length: 261)
Name: NF18217_low_10
Description: NF18217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18217_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 37961284 - 37961523
Alignment:
| Q |
1 |
aggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggag |
100 |
Q |
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| T |
37961284 |
aggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttttgggaatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggag |
37961383 |
T |
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| Q |
101 |
ggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgttgaattgggtga |
200 |
Q |
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| T |
37961384 |
ggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgttgaattgggtga |
37961483 |
T |
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| Q |
201 |
caataaaaccatggtatgtcgaagaaagttaagggtagaa |
240 |
Q |
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| T |
37961484 |
caataaaaccatggtatgtcgaagaaagttaagggtagaa |
37961523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37906784 - 37906556
Alignment:
| Q |
1 |
aggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggag |
100 |
Q |
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| T |
37906784 |
aggaaatagagtcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaag |
37906685 |
T |
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| Q |
101 |
ggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgttgaa---ttggg |
197 |
Q |
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| T |
37906684 |
ggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatacgtttaacagtgggt |
37906585 |
T |
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| Q |
198 |
tgacaataaaaccatggtatgtcgaagaa |
226 |
Q |
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| T |
37906584 |
tgacagtaaaaccatgaaatgtcgaagaa |
37906556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 37914947 - 37914759
Alignment:
| Q |
1 |
aggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggag |
100 |
Q |
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| T |
37914947 |
aggagatagagtcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaag |
37914848 |
T |
|
| Q |
101 |
ggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgtt |
189 |
Q |
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| T |
37914847 |
ggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtt |
37914759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 3782967 - 3782828
Alignment:
| Q |
87 |
aagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatac |
186 |
Q |
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| T |
3782967 |
aagaagtgttcgagggtgatggaaagagagtgtttgagaatgggaagtattgtttggagaaagtgatgagttggatgaggaaagtggtagaagaagatgc |
3782868 |
T |
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| Q |
187 |
gttgaattgggtgacaataaaaccatggtatgtcgaagaa |
226 |
Q |
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| T |
3782867 |
gtttaatggttcgacagcaaaaccatggaatgtccaagaa |
3782828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 4957761 - 4957855
Alignment:
| Q |
72 |
ttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgagg |
166 |
Q |
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|||||||| ||||||||||| ||| |||| || | |||||| |||| ||||||||| || |||| ||||||||||| || || |||| |||||| |
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| T |
4957761 |
ttagaggagaaagggaagaaatgttggagagtgagggaaagagagtttttgagaattggtagtgaagtttgaaggaagtgttgtgttgaatgagg |
4957855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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