View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18217_low_2 (Length: 543)
Name: NF18217_low_2
Description: NF18217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18217_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 7 - 539
Target Start/End: Original strand, 42686545 - 42687077
Alignment:
| Q |
7 |
ttaacgtcattttaatagtaacaactttagaaactttggtcatcactgaataaatttaattatatatgtagcaaatggaaaagggaaagttggaaaggat |
106 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686545 |
ttaacgtcattttaataataacaactttagaaactttggtcatcactgaataaatttaattatatatgtagcaaatggaaaagggaaagttggaaaggat |
42686644 |
T |
|
| Q |
107 |
acatttctggaaggtattcttgcctcattaccaaccttgggagctggtgaaaacgcattcaatattcattttgaatggaatgatgagatgggaattcctg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686645 |
acatttctggaaggtattcttgcctcattaccaaccttgggagctggtgaaaacgcattcaatattcattttgaatggaatgatgagatgggaattcctg |
42686744 |
T |
|
| Q |
207 |
gtgcattttacatcaagaattatatgcaagttgagttttatctcaagagtctaactcttgaagatgttccaaaccatggaaccattcgatttgtatgcaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686745 |
gtgcattttacatcaagaattatatgcaagttgagttttatctcaagagtctaactcttgaagatgttccaaaccatggaaccattcgatttgtatgcaa |
42686844 |
T |
|
| Q |
307 |
ctcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgccaacaaggtacttgacatcaatatatttagtgcatgttttgtagtacgg |
406 |
Q |
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| T |
42686845 |
ctcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgccaacaaggtacttgacatcaatatatttagtgcatgttttgtagtacgg |
42686944 |
T |
|
| Q |
407 |
taggtttatcacagtcatagtgagctaccgtgatattagcaatcaacggtgatactaaacatgcacttattttcatatcaagtatattttaccaaagtaa |
506 |
Q |
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| T |
42686945 |
taggtttatcacagtcatagtgagctaccgtgatattagcaatcaactgtgatactaaacatgcacttattttcatatcaagtatattttaccaaagtaa |
42687044 |
T |
|
| Q |
507 |
ccattatttttaaacgaactttctgatgatgtc |
539 |
Q |
| |
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| T |
42687045 |
ccattatttttaaacgaactttctaatgatgtc |
42687077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 75 - 367
Target Start/End: Complemental strand, 42694986 - 42694694
Alignment:
| Q |
75 |
tagcaaatggaaaagggaaagttggaaaggatacatttctggaaggtattcttgcctcattaccaaccttgggagctggtgaaaacgcattcaatattca |
174 |
Q |
| |
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|||||||||| ||||| || ||||||||| ||| ||| ||||||| || || | || |||||||| |||||||| || || ||||| || ||||| |
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| T |
42694986 |
tagcaaatgggaaaggaaagcttggaaaggctacctttttggaagggataattacttccttaccaacattgggagcaggacaatctgcatttaaaattca |
42694887 |
T |
|
| Q |
175 |
ttttgaatggaatgatgagatgggaattcctggtgcattttacatcaagaattatatgcaagttgagttttatctcaagagtctaactcttgaagatgtt |
274 |
Q |
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| T |
42694886 |
ttttgaatgggatgatgacatgggaattcctggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaagacatt |
42694787 |
T |
|
| Q |
275 |
ccaaaccatggaaccattcgatttgtatgcaactcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgccaacaaggta |
367 |
Q |
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| T |
42694786 |
ccaaatcatggaagcatctactttgtatgcaactcctggatttataatgccaaacaccacaaacttgaccgcattttctttgccaataaggta |
42694694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 367
Target Start/End: Complemental strand, 6364824 - 6364717
Alignment:
| Q |
260 |
actcttgaagatgttccaaaccatggaaccattcgatttgtatgcaactcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgcca |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| |||||||| | ||||||||||||||||| |
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| T |
6364824 |
actcttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgcca |
6364725 |
T |
|
| Q |
360 |
acaaggta |
367 |
Q |
| |
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|||||||| |
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|
| T |
6364724 |
acaaggta |
6364717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 321
Target Start/End: Complemental strand, 6354247 - 6354008
Alignment:
| Q |
82 |
tggaaaagggaaagttggaaaggatacatttctggaaggtattcttgcctcattaccaaccttgggagctggtgaaaacgcattcaatattcattttgaa |
181 |
Q |
| |
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||||||||| ||||| |||||||| ||||||||||||||| ||||| |||| ||||||| ||||||| |||| || |||| ||||||||||||| |
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| T |
6354247 |
tggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccataccaacattgggagacaaacaaaatgctttcagtattcattttgaa |
6354148 |
T |
|
| Q |
182 |
tggaatgatgagatgggaattcctggtgcattttacatcaagaattatatgcaagttgagttttatctcaagagtctaactcttgaagatgttccaaacc |
281 |
Q |
| |
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||| | | | ||||||||||| || || ||||||||| | |||| |||||||| ||| || | || |||| | || ||||||||||||||||||| |
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| T |
6354147 |
tgggacagtaacatgggaattcccggagctttttacatcgataattttatgcaaggtgaattcttccttgtgagtttgacacttgaagatgttccaaacc |
6354048 |
T |
|
| Q |
282 |
atggaaccattcgatttgtatgcaactcttgggtttacaa |
321 |
Q |
| |
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||||| |||| | ||||| |||||||| ||| ||||||| |
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| T |
6354047 |
atggatccatccactttgtctgcaactcatggatttacaa |
6354008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 6425611 - 6425553
Alignment:
| Q |
263 |
cttgaagatgttccaaaccatggaaccattcgatttgtatgcaactcttgggtttacaa |
321 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
6425611 |
cttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcttgggtttacaa |
6425553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 367
Target Start/End: Complemental strand, 6290831 - 6290727
Alignment:
| Q |
263 |
cttgaagatgttccaaaccatggaaccattcgatttgtatgcaactcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgccaaca |
362 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||| |||||||| ||| ||||||| || || ||||||| | |||||| ||||||||||||| |
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| T |
6290831 |
cttgaagatgttcccaaccatggaaccatcaactttgtttgcaactcatggatttacaatgctcaaaactacaaaactgaacgcatcttctttgccaaca |
6290732 |
T |
|
| Q |
363 |
aggta |
367 |
Q |
| |
|
||||| |
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|
| T |
6290731 |
aggta |
6290727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 7461257 - 7461207
Alignment:
| Q |
82 |
tggaaaagggaaagttggaaaggatacatttctggaaggtattcttgcctc |
132 |
Q |
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||||||||| ||||| |||||||| ||||||||||||||| ||||| |||| |
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| T |
7461257 |
tggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctc |
7461207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 6323058 - 6323001
Alignment:
| Q |
263 |
cttgaagatgttccaaaccatggaaccattcgatttgtatgcaactcttgggtttaca |
320 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||| |
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|
| T |
6323058 |
cttgaagatattccaaaccatggaaccatcaactttgtatgcaactcatggatttaca |
6323001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 7461076 - 7461048
Alignment:
| Q |
263 |
cttgaagatgttccaaaccatggaaccat |
291 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
7461076 |
cttgaagatgttccaaaccatggaaccat |
7461048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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