View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18217_low_4 (Length: 380)
Name: NF18217_low_4
Description: NF18217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18217_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 20678450 - 20678658
Alignment:
| Q |
18 |
gattaatggttcccaactgcaggccaaacagaatgcaaggttcatttaattgaaacaaatacttaaaggaagaagatgactccctgttcaaagtgtcatc |
117 |
Q |
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| T |
20678450 |
gattaatggttcccaactgcaggccaaacagaatgcaaggttcatttaattgaaacaaatacttaaaggaagaagatgactccctgttcaaagtgtcatc |
20678549 |
T |
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| Q |
118 |
atgtacacctacctctagatatttgttcattacttgtggattttcttgcggttattacttca---------tttcctacaaatcttaattttgcaggaat |
208 |
Q |
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| T |
20678550 |
atgtacacccacctctagatatttgttcattacttgtgggttttcttgcggttattacttcataaaggacttttcctacaaatcttaattttgcaggaat |
20678649 |
T |
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| Q |
209 |
atctgcaaa |
217 |
Q |
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| T |
20678650 |
atctgcaaa |
20678658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 216 - 375
Target Start/End: Original strand, 20678695 - 20678854
Alignment:
| Q |
216 |
aaatttagaattcatttttgaattttcctgcggctttacatgcgatgttagacacagtaaacaattttgcaacaaaatcctcatgtttactaaaccgctt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20678695 |
aaatttagaattcatttttgaattttcctgcggctttacatgcgatgttagacacagtaaacaattttgcaacaaaatcctcatgtttagtaaaccgctt |
20678794 |
T |
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| Q |
316 |
gaaaattttgcaggtattcctacagattttcttacggatccacatgttaggtttcctatg |
375 |
Q |
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| T |
20678795 |
gaaaattttgcaggtattcctacagattttcttacggacacacatgttaggtttcctatg |
20678854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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