View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18217_low_5 (Length: 373)
Name: NF18217_low_5
Description: NF18217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18217_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 30480489 - 30480689
Alignment:
| Q |
14 |
aatatccatagttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||| |
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| T |
30480489 |
aatatccatagttcaaagagaaataaatggctcctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatctactaaaatatatg |
30480588 |
T |
|
| Q |
114 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctcttatagtttctgtggttcag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30480589 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccgaaattatcacctcttatagtttctgtggttcag |
30480688 |
T |
|
| Q |
214 |
c |
214 |
Q |
| |
|
| |
|
|
| T |
30480689 |
c |
30480689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 30433024 - 30433205
Alignment:
| Q |
14 |
aatatccatagttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatg |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30433024 |
aatatccatatttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactaaaatatatg |
30433123 |
T |
|
| Q |
114 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctctt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| |
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| T |
30433124 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacagttgatttcttgttcatatcatccaaaatcatcacctctt |
30433205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 30716572 - 30716372
Alignment:
| Q |
14 |
aatatccatagttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatg |
113 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
30716572 |
aatatccatagttcaaagcgaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatataaa |
30716473 |
T |
|
| Q |
114 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctcttatagtttctgtggttcag |
213 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
30716472 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagattctgtggttcag |
30716373 |
T |
|
| Q |
214 |
c |
214 |
Q |
| |
|
| |
|
|
| T |
30716372 |
c |
30716372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 30680394 - 30680194
Alignment:
| Q |
14 |
aatatccatagttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatg |
113 |
Q |
| |
|
|||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
30680394 |
aatatccatagttcgaagcgaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatataaa |
30680295 |
T |
|
| Q |
114 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctcttatagtttctgtggttcag |
213 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
30680294 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattgatatcatccaaaatcatcacctcttatagtttctgtggttcag |
30680195 |
T |
|
| Q |
214 |
c |
214 |
Q |
| |
|
| |
|
|
| T |
30680194 |
c |
30680194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 30056830 - 30057029
Alignment:
| Q |
11 |
aagaatatccatagttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatat |
110 |
Q |
| |
|
||||||||||||||||| ||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
30056830 |
aagaatatccatagttcgaagcgaaataagtgtcacctgttcagtttcataggagatgctctctgtaagtgatatgactaatgctaatatactaaaatat |
30056929 |
T |
|
| Q |
111 |
atggagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctcttatagtttctgtggtt |
210 |
Q |
| |
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| |||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30056930 |
aaagagttaaaagataaaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggtt |
30057029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 30203879 - 30204043
Alignment:
| Q |
14 |
aatatccatagttcaaagagaaa--taaatggcacctgttcagtttcacaggagatg-ctctctgtaagtgatatgaataatgctaatatactgaaatat |
110 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| ||||||| | | |||||||| ||||| ||| |||||||||| | || ||||| |
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|
| T |
30203879 |
aatatccatagttcgaagagaaaaataaatggcacctgttcagttccacaggaaaaggctctctgttagtgaaatggctaatgctaatctgctataatat |
30203978 |
T |
|
| Q |
111 |
atggagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatc |
175 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
30203979 |
atggagttaaaagatgccaaattcactttgttatcaaataaaactgttgatttctcattcgtatc |
30204043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 30396998 - 30397080
Alignment:
| Q |
89 |
taatgctaatatactgaaatatatggagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattca |
171 |
Q |
| |
|
|||||||||| |||| ||||||| | |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
30396998 |
taatgctaatctactaaaatatacgtagttaaaagatggaaaattcactttgttataaaataaaacaattgatttctcattca |
30397080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 40676856 - 40677024
Alignment:
| Q |
25 |
ttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatg-gagttaaaag |
123 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||| |||||||| ||| ||||||| | | ||||||||| ||| |||| || ||||| |||| |
|
|
| T |
40676856 |
ttcaaacagaaataaatggcacatgttcagttccacgagagatgctatctataagtgaaacaacgaatgctaatcaactaaaattgataagagtttaaag |
40676955 |
T |
|
| Q |
124 |
atgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacct |
192 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||| | ||||||||| |||||| | ||||||| |
|
|
| T |
40676956 |
atgcaaatttcactttgctatcaaataaaaatattgatttgttattcatatcctccaaagtcatcacct |
40677024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 30746455 - 30746501
Alignment:
| Q |
168 |
ttcatatcatccaaaattatcacctcttatagtttctgtggttcagc |
214 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
30746455 |
ttcatatcatccaaaatcatcaccttttatagtttctgtggttcagc |
30746501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 20302550 - 20302350
Alignment:
| Q |
14 |
aatatccatagttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatg |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
20302550 |
aatagccatagttcaaagagaaataaatggcacctgttcggttacacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatatatg |
20302451 |
T |
|
| Q |
114 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctcttatagtttctgtggttcag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20302450 |
gagttaaaagatgcaaaattcactttgttatcaaataaaatggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
20302351 |
T |
|
| Q |
214 |
c |
214 |
Q |
| |
|
| |
|
|
| T |
20302350 |
c |
20302350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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