View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18217_low_6 (Length: 323)
Name: NF18217_low_6
Description: NF18217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18217_low_6 |
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| [»] chr4 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 31201939 - 31202245
Alignment:
| Q |
17 |
gaaatttggccttactatggtatcctgtgatgttctgcaggagttcttcggatttcccacaattggagaggatcttgagcacctgaactcctctcatcct |
116 |
Q |
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| T |
31201939 |
gaaatttggccttactatggtatcctgtgatgttctgcaggagttcttctgatttcccacaattggagaggatcttgagcacctgaactcctctcatcct |
31202038 |
T |
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| Q |
117 |
gttaacatgaaccaaaattaaattaaatttttcttttgtatattccctgccatatcctaaaaatgttgttattaaatcaagaatgtgatagacttacatt |
216 |
Q |
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| T |
31202039 |
gttaacatgaaccaaaattaaattaaatttttcttttgtatattccctgccatatcctaaaaatgttgttattaaatcaagaatgtgatagacttacatt |
31202138 |
T |
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| Q |
217 |
ggccctagaagaatgatgagatctgtaaaacacaggtacttcattgaattcatgaggattattggaagtgtgatgaggagcaccataggctctagaatct |
316 |
Q |
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| T |
31202139 |
ggccctagaagaatgatgagatctgtaaaacacaggtacttcattgaattcatgaggattattggaagtgtgatgaggagcaccataggctctagaatct |
31202238 |
T |
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| Q |
317 |
gttctcc |
323 |
Q |
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| T |
31202239 |
gttctcc |
31202245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 135 - 323
Target Start/End: Original strand, 31215338 - 31215527
Alignment:
| Q |
135 |
taaattaaatttttcttttgtatattccc-tgccatatcctaaaaatg-ttgttattaaatcaagaatgtgatagacttacattggccctagaagaatga |
232 |
Q |
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| T |
31215338 |
taaattcaatttttcttttgtatattcccctgccgtatcctaaaaaaaattgttattaaatcaagaatgtgatagacttacattggctctagaagagtga |
31215437 |
T |
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| Q |
233 |
tgagatctgtaaaacacaggtacttcattgaattcatgaggattattggaagtgtgatgaggagcaccataggctctagaatctgttctcc |
323 |
Q |
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| T |
31215438 |
t-agatctgaaaaacacaggaacttcattgaattcatgaggattattggaagtgtgaggaggagcatcataggctctagaatctgttctcc |
31215527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 31215174 - 31215240
Alignment:
| Q |
26 |
ccttactatggtatcctgtgatgttctgcaggagttcttcggatttcccacaattggagaggatctt |
92 |
Q |
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| T |
31215174 |
ccttactatggtatcctgtgatgttctgtaggagttcttctgacttcccacaagtggagtggatctt |
31215240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 171 - 323
Target Start/End: Original strand, 13605865 - 13606017
Alignment:
| Q |
171 |
tcctaaaaatgttgttattaaatcaagaatgtgatagacttacattggccctagaagaatgatgagatctgtaaaacacaggtacttcattgaattcatg |
270 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||| ||||||| || |||||||||| ||||||||||||||||| |||||||||||| |
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| T |
13605865 |
tcctaaaaatattgttattaaatcaagaatgtgattgacttacattagccctagtggagtgatgagatccgtaaaacacaggtacttaattgaattcatg |
13605964 |
T |
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| Q |
271 |
aggattattggaagtgtgatgaggagcaccataggctctagaatctgttctcc |
323 |
Q |
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| T |
13605965 |
aggattattgtaagtttgataaggagcatcataggctctagaatctgttctcc |
13606017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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