View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18218_high_1 (Length: 532)
Name: NF18218_high_1
Description: NF18218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18218_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 44974032 - 44973530
Alignment:
| Q |
18 |
ggaccaacaatggcaagaatctcagaagggtatgctgtgagggaaacatctttgaggatgtagtttnnnnnnnttggtgtacaatgtttgaagaagagaa |
117 |
Q |
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| T |
44974032 |
ggaccaacaatggcaagaatctcagaagggtatgctgtgagggaaacatctttgaggatgtagtttgggggggttggtgtacaatgtttgaagaagagaa |
44973933 |
T |
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| Q |
118 |
atggtgcaatgatggagttgtttgtttgtaggtttttggagtaagagattgaagttgctgttagtttgtatgtttttggtggaagtggtgatggttggtt |
217 |
Q |
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| T |
44973932 |
atggtgcaatgatggtgttgtttgtttgtaggtttttggagtaagagattgaagttgctgttagtttgtatgtttttggtggaagtggtgatggttggtt |
44973833 |
T |
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| Q |
218 |
ttccatagctaagggagagaagttggagtgaaattaaggttttggtgggatggaacaatgagtgtttgtgtttccatgcgtt-ggaatgtataacgttgg |
316 |
Q |
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| T |
44973832 |
ttccatagctaagggagagaagttggagtgaaattaaggttttggtgggatggaacaatgagtgtttgtgtttccatgcgttgggagagtataacgttgg |
44973733 |
T |
|
| Q |
317 |
tgtggatgataaagagagacaaaaataaaggaataattaaaaatgttttgtaccttttggtggttgcattattatcctactatttttcctatcatggaat |
416 |
Q |
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| T |
44973732 |
tgtggatgataaagagagacaaaaataaaggaataattaaaaatgttttgtaccttttggtggttgcattattatcctactatttttcctatcatggaat |
44973633 |
T |
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| Q |
417 |
tatactgtattacaagcaatcagcacttatatatatagtccgtgagccttttgtgtttataaatgcaaaaatgatatacattttatttaacaactcatta |
516 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
44973632 |
tatactgtattacaagcaatcagcact----tatatagtccgtgagccttttgtgtttataaatgcaacaatcatatacattttatttaacaactcatta |
44973537 |
T |
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| Q |
517 |
ttttctt |
523 |
Q |
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| T |
44973536 |
ttttctt |
44973530 |
T |
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