View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18219_high_17 (Length: 222)
Name: NF18219_high_17
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18219_high_17 |
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| [»] scaffold0063 (1 HSPs) |
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| [»] scaffold0126 (1 HSPs) |
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| [»] scaffold0084 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 4590122 - 4590333
Alignment:
| Q |
1 |
acatcgcattcctcttagagatattacatgttctttggcactgatcacattatcaacaagtatttaaaaggtgcatataagaggatggaaaaggtcccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4590122 |
acatcgcattcctcttagagatattacatgttctttggcactgatcacattatcaacaagtatttaaaaggtgcatataagaggatggaaaaggtcacat |
4590221 |
T |
|
| Q |
101 |
gaagacaatgccccaacaatcaaaaggttcaatttctaaaattccattatagggcatctcattc-----agagatattacttgttctttggcactgatca |
195 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
4590222 |
gaagtcaatgccccaacaatcaaaaggttcaatttctaaaattccattatggggcatctcattccttttagagatattacttgttctttggcatcgatca |
4590321 |
T |
|
| Q |
196 |
cattgtcaacaa |
207 |
Q |
| |
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|||||||||||| |
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| T |
4590322 |
cattgtcaacaa |
4590333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 4590045 - 4590180
Alignment:
| Q |
77 |
ataagaggatggaaaaggtcccatgaagacaatgccccaacaatcaaaaggttcaatttctaaaattccattatagggcatctcattc-----agagata |
171 |
Q |
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||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||||| |
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| T |
4590045 |
ataagaggatgagaaaggtcctatgaagtcaatgccccaacagtcaaaaggttcaatttctaaaattccattataggacatcgcattcctcttagagata |
4590144 |
T |
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| Q |
172 |
ttacttgttctttggcactgatcacattgtcaacaa |
207 |
Q |
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|||| ||||||||||||||||||||||| ||||||| |
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| T |
4590145 |
ttacatgttctttggcactgatcacattatcaacaa |
4590180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 4590276 - 4590344
Alignment:
| Q |
2 |
catcgcattcctcttagagatattacatgttctttggcactgatcacattatcaacaagtatttaaaag |
70 |
Q |
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|||| ||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |
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| T |
4590276 |
catctcattccttttagagatattacttgttctttggcatcgatcacattgtcaacaagtatttaaaag |
4590344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 26140964 - 26141018
Alignment:
| Q |
78 |
taagaggatggaaaaggtcccatgaagacaatgccccaacaatcaaaaggttcaa |
132 |
Q |
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|||||||| || || |||||||| ||| ||||||||||||||||||| ||||||| |
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| T |
26140964 |
taagaggaagggaacggtcccataaagtcaatgccccaacaatcaaatggttcaa |
26141018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 27158124 - 27158066
Alignment:
| Q |
78 |
taagaggatggaaaaggtcccatgaagacaatgccccaacaatcaaaaggttcaatttc |
136 |
Q |
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||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||||| |
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| T |
27158124 |
taagaggatgggaaaggtcccatgaagtcaacgccccaacaatcaaatggttcaatttc |
27158066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 15537574 - 15537645
Alignment:
| Q |
77 |
ataagaggatggaaaaggtcccatgaagacaatgccccaacaatcaaaaggttcaatttctaaaattccatt |
148 |
Q |
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||||||||| ||||| ||||||||||| | || |||||||||||||| ||||||||||||||||| ||||| |
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| T |
15537574 |
ataagaggagggaaatggtcccatgaaatcgattccccaacaatcaaagggttcaatttctaaaataccatt |
15537645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 34138183 - 34138237
Alignment:
| Q |
78 |
taagaggatggaaaaggtcccatgaagacaatgccccaacaatcaaaaggttcaa |
132 |
Q |
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|||||||| || || |||||||| ||| ||||||||||||||||||| ||||||| |
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| T |
34138183 |
taagaggaagggaatggtcccataaagtcaatgccccaacaatcaaatggttcaa |
34138237 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 12198 - 12283
Alignment:
| Q |
78 |
taagaggatggaaaaggtcccatgaagacaatgccccaacaatcaaaaggttcaatttctaaaattccattatagggcatctcatt |
163 |
Q |
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|||||||| ||||| ||||||||||| | || |||||||| ||||| ||||||||||||||||| ||||| |||||| |||||| |
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| T |
12198 |
taagaggagggaaatggtcccatgaaatcgataccccaacagtcaaagggttcaatttctaaaataccatttaagggcacctcatt |
12283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 9265 - 9319
Alignment:
| Q |
78 |
taagaggatggaaaaggtcccatgaagacaatgccccaacaatcaaaaggttcaa |
132 |
Q |
| |
|
||||||| ||||| |||||||| ||| ||||||||||||||||||| ||||||| |
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| T |
9265 |
taagaggggggaaatggtcccataaagtcaatgccccaacaatcaaatggttcaa |
9319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 24235 - 24181
Alignment:
| Q |
78 |
taagaggatggaaaaggtcccatgaagacaatgccccaacaatcaaaaggttcaa |
132 |
Q |
| |
|
|||||||| || || |||||||| ||| ||||||||||||||||||| ||||||| |
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| T |
24235 |
taagaggaagggaacggtcccataaagtcaatgccccaacaatcaaatggttcaa |
24181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 24405339 - 24405285
Alignment:
| Q |
78 |
taagaggatggaaaaggtcccatgaagacaatgccccaacaatcaaaaggttcaa |
132 |
Q |
| |
|
|||||||| || || |||||||| ||| ||||||||||||||||||| ||||||| |
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|
| T |
24405339 |
taagaggaagggaatggtcccataaagtcaatgccccaacaatcaaatggttcaa |
24405285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 22022525 - 22022471
Alignment:
| Q |
78 |
taagaggatggaaaaggtcccatgaagacaatgccccaacaatcaaaaggttcaa |
132 |
Q |
| |
|
|||||||| || || |||||||| ||| ||||||||||||||||||| ||||||| |
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|
| T |
22022525 |
taagaggaagggaatggtcccataaagtcaatgccccaacaatcaaatggttcaa |
22022471 |
T |
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